CX290475

Overview
NameCX290475
Unique NameCX290475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.046e-21
Identity = 62/153 (40.52%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  223 KEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVD--PKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNK------QRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRR 657
            ++ DEE +E   L RE  +  G     E  LLF+IR++G  AV    K  K+L LLRL ++  GVF+K+ K    +L  V PY+  G P+L S+R LI KR      +      + I L DN+I+E+ LG  G+IC+ED+IHEI T+G +F +
Sbjct:  112 QDVDEEDEEDDGLIREKIVYDG-----EPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSK 259          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21
Identity = 58/121 (47.93%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  313 LLFIIRIRGINAVDPKTK--KILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHF 651
            LLFI+R+RG  AV+   K  KIL LLRL +   GVF+K+ K    +L  + PYV  G P+L S+R LI KRG        +     I L DN+I+E+ LG HGIIC+ED+IHEI T+G  F
Sbjct:  141 LLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESF 261          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 53/130 (40.77%), Postives = 84/130 (64.62%), Query Frame = 1
Query:  298 NPEAKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRG---YGKLNKQ---RIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQN 663
            N E +LLF++R++G  A  +  K  +IL  LRL ++   VF+K+ + T ++L  + PYV  G P+LKS+R LI KR    Y + +++    I L DN+I+E+ LG  G+IC++D+IHEI T+G +F + N
Sbjct:  131 NGEEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTKCN 260          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 1
Query:  307 AKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQN 663
            A LLF++R+RG  A  +  K  ++L LLRL ++  GVF+++      +L  V PYV  G P+L S+R L+ KR        G+     + L DN ++E+ LG  G+IC+ED+IHEI T+G  F + N
Sbjct:  110 ATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAKCN 236          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 51/162 (31.48%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  208 TKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGPSAQAP 693
            T++   +Y E+++E+  L++++ +K GFYV  EA+   +I IR      PK +K+L+L RL++I   V ++ NK+T  ML  ++ +V +G   ++ +R+L+Y +G G+    R+ LT+  I +   G+  I C+E+L+H I      F++ N+   P   +P
Sbjct:   48 TEKLLNKYYEQEREI--LEKKSSMKNGFYVPKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVHHIYNGTEMFKKVNSFLYPFHLSP 205          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 54/127 (42.52%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  307 AKLLFIIRI----RGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGY-----GKLNKQRIA-LTDNSIIEQALGQH-GIICMEDLIHEILTVGPHFR 654
            AKLLFIIRI    +G+  V  K +K+L LLRL +   GVF+K+  AT+ +L  + PY+  G P+L S+R+L  KR        +  + RI  L +N ++E   G   G IC+EDLIHE+ T+G HF+
Sbjct:   92 AKLLFIIRIPDHTKGLK-VPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFK 217          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 45/122 (36.89%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  313 LLFIIRIRG-INAVDP-KTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKL------NKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFR 654
            L  I+R  G + A  P K +K+LQLLRL +I +GVF+K+ +    +L  + PY     P+L++VR+L+ KR    +        +++ L DN+++E+ LG  GIIC+ED+IHE   +   F+
Sbjct:   32 LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIHETSHLATTFK 153          
The following BLAST results are available for this feature:
BLAST of CX290475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_KLULA1.046e-2140.52Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_YEAST1.366e-2147.93Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_CANGA1.972e-2040.77Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_ASHGO3.720e-1939.37Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RL7_ENCCU7.015e-1831.4860S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_DEBHA3.481e-1742.52Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RLP7_PICJA9.481e-1536.89Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionC02024F01SK IF1 Citrus clementina cDNA clone C02024F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290475 ID=CX290475; Name=CX290475; organism=Citrus clementina; type=EST; length=693bp
ACGAGGGCCAGATCGCCTCCGTGAAGAAGATAGACGTCTAAAAGACCTCT
AAGAACAAAAGAGATGGCTGAAGCGGCAGCTGTTGTGGTACCAGAGTCAG
TGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGAAGCAG
GAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTCATTTA
CAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAAAGAAC
TCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATGTCAAC
CCAGAAGCTAAGCTTTTGTTTATCATCAGGATTCGCGGTATCAATGCTGT
TGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACAGATTT
TTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGCTGCAC
AGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAG
AGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTG
CTTTGACCGACAATTCTATCATTGAACAGGCTCTTGGGCAGCATGGAATT
ATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTT
CAGGAGGCAAAACACTTCCTATGGCCCTTCAGCTCAGGCACCA
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