CX290520

Overview
NameCX290520
Unique NameCX290520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 RPRERMRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR-------------------TGEEP--EIAARKLTETAFTRGSADNITCIVV 333
            R  E  RIE AGG V+ W G  RV GVLAMSR+ G++ L+ FV+ +PE+  +      E L+LASDGLWDV+ N++A   AR                    GE+   + AA  L++ A   GS DNI+ IV+
Sbjct:  368 REDEYARIEKAGGKVIQWQGA-RVSGVLAMSRSIGDQYLEPFVIPDPEVTFMPRAREDECLILASDGLWDVMSNQEACDFARRRILAWHKKNGALPLAERGVGEDQACQAAAEYLSKLAIQMGSKDNISIIVI 499          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PP2C1_YEAST (Protein phosphatase 2C homolog 1 OS=Saccharomyces cerevisiae GN=PTC1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   10 ERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVV 333
            E  R+E AGG++M +   RV G+LA++R+ G++     VV  P    +E+    + L+LA DGLWDV+ ++DA  L +   EP  AA+ L   A   G+ DN+T +VV
Sbjct:  175 EMQRVEQAGGLIMKS---RVNGMLAVTRSLGDKFFDSLVVGSPFTTSVEITSEDKFLILACDGLWDVIDDQDACELIKDITEPNEAAKVLVRYALENGTTDNVTVMVV 279          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVA-----LARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPEVEQE*ESSF 399
            R  E+ RIE  GG V+W G WRV G L++SRA G+   K ++  + +     +D   + L+LA DG +D V  ++AV      L     +  + A KL  +A   GS+DNIT IVV    +N+     E  +  E+SF
Sbjct:  368 REDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVVFLRDMNKAVNVSEESEWTENSF 505          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   10 ERMRIENAGGVV--MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 339
            E+  IEN GG V        RV G LA++RAFG++ LK  + +EP +    +D+  E L+LASDGLW V+ N++AV   +  ++ + AA+ L E A  R S+D+I+ +VV+F
Sbjct:  177 EKDEIENRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPYVTVEIIDDDAEFLILASDGLWKVMSNQEAVDSIKGIKDAKAAAKHLAEEAVARKSSDDISVVVVKF 288          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 57/135 (42.22%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    1 RPRERMRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR---------TGEEP--------------EIAARKLTETAFTRGSADNITCIVV 333
            R  E  RIE  GG V+ W G +RV GVLAMSR+ G+R LK +++  PEI  +   +  E LVLASDGLWDV+ NE+   +AR          G  P              E AA  L++ A  +GS DNI+ IVV
Sbjct:  322 REDEYARIEAEGGKVIQWNG-YRVFGVLAMSRSIGDRYLKPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGTNPASAPRSGDSSDPAAEAAAECLSKLALQKGSKDNISVIVV 455          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPM1E_RAT (Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm1e PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVA-----LARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPEVEQE*ESSF 399
            R  E+ RIE  GG V+W G WRV G L++SRA G+   K ++  + +     +D   + L+LA DG +D V  ++AV      L     +  + A KL  +A   GS+DNIT IVV    +N+     E     E+SF
Sbjct:  368 REDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVVFLRDMNKAVNVSEESDWTENSF 505          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 55/138 (39.86%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 RPRERMRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR------------------------TGEEPEI--AARKLTETAFTRGSADNITCIVV 333
            R  E  RIE AGG V+ W G  RV GVLAMSR+ G+R LK  V+ +PE+  +   +  + L+LASDGLWDV+ NE+   LAR                         G++P    AA  L++ A  +GS DNI+ +VV
Sbjct:  273 RDDEAARIEAAGGKVIRWNGA-RVFGVLAMSRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDLARKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAEYLSKMALQKGSKDNISVVVV 409          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 55/141 (39.01%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQ---------FVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALA----RTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPEVEQE 384
            RPRER RI +AGG V      RV G LA+SRA G+   KQ          V AEPE+  L   +  E ++LASDG+WD +   D   L     R G + E+   +L +T   +GS DN+TC+VV F      P E  + +E
Sbjct:  197 RPRERERIHDAGGTVRRR---RVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWDALSGADLAGLVTSRLRLGLDLELLCAQLLDTCLCKGSLDNMTCMVVCFPGAPR-PCEEAISKE 333          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVA-----LARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPEVEQE*ESSF 399
            R  E+ RIE  GG ++W G WRV G L++SRA G+   K ++  + +     +D   + L+LA DG +D V  ++AV      L     +  + A KL  +A   GS+DNIT IVV    +N+     E     E+SF
Sbjct:  382 REDEKQRIEALGGCIVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVVFLRDMNKAVNVSEESDWTENSF 519          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 55/146 (37.67%), Postives = 74/146 (50.68%), Query Frame = 1
Query:    1 RPRERMRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART------------------------------GEEPEIAARK----LTETAFTRGSADNITCIVV 333
            RP E  RI+ AGG V+ W G  RV GVLAMSRA G+  LK +V++ PE+   +   G + L+LASDGLWDVV NE A ++ R                               G+ P+ A  +    LT  A  R S+DN++ +VV
Sbjct:  263 RPDELDRIQAAGGRVIYWDGP-RVLGVLAMSRAIGDNYLKPYVISRPEVTVTDRANGDDFLILASDGLWDVVSNETACSVVRMCLRGKVNGQVSSSPEREMTGVGAGNVVVGGGDLPDKACEEASLLLTRLALARQSSDNVSVVVV 407          
The following BLAST results are available for this feature:
BLAST of CX290520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
P2C07_ARATH3.120e-1540.60Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
PP2C1_YEAST4.075e-1538.89Protein phosphatase 2C homolog 1 OS=Saccharomyces ... [more]
PPM1E_MOUSE6.952e-1535.51Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
P2C39_ARATH6.952e-1541.07Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C06_ORYSJ9.079e-1542.22Probable protein phosphatase 2C 6 OS=Oryza sativa ... [more]
PPM1E_RAT1.186e-1435.51Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm... [more]
P2C77_ARATH1.186e-1439.86Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
PPMBL_MOUSE1.549e-1439.01Probable protein phosphatase 1B-like OS=Mus muscul... [more]
PPM1E_HUMAN1.549e-1434.78Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]
P2C78_ARATH2.642e-1437.67Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC02025A12SK IF1 Citrus clementina cDNA clone C02025A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290520 ID=CX290520; Name=CX290520; organism=Citrus clementina; type=EST; length=678bp
CGGCCGAGGGAGCGGATGAGAATTGAAAATGCCGGAGGCGTTGTAATGTG
GGCAGGCACTTGGAGAGTAGGAGGTGTGCTAGCTATGTCTCGTGCTTTTG
GTAACCGCATGCTGAAGCAATTTGTCGTTGCGGAACCTGAGATCCAGGAC
CTTGAAGTAGATGAAGGATTTGAGCTGCTTGTGCTTGCAAGTGATGGACT
ATGGGATGTAGTACCCAATGAGGATGCTGTTGCACTTGCCCGAACAGGGG
AAGAACCTGAAATCGCAGCTCGGAAGTTAACGGAGACTGCTTTTACCCGA
GGCAGTGCTGACAACATAACGTGCATTGTAGTGAGATTCCACCACGTCAA
TGAAGATCCAGCCGAACCTGAAGTGGAGCAGGAGTAGGAATCTTCATTTA
TGTTGCATGGTGTAGGTTTATCGACCCTTTAGGCTGTAGATCATCTGGAA
ATCTGCACATGCATGGCTGAATGTGCATAGCAACAGGGAGGAAGGCGATT
TTTTTATTCATTGTTTCTTTTTTTTCCCCGCACCCCCCTAATTTGAACCT
TTCTGTATTGACTGCATATATTGAGTCTTGGTTCATTCCAGAATAACTAT
TCCTCTTCGCTCCATAATGTGGCCTGGTAATCTGTATGTCTAAATGCCCG
TTCTGGGTATTTCGGTCTTAAGTTATAA
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