CX290520

Overview
NameCX290520
Unique NameCX290520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPM1K_XENLA (Protein phosphatase 1K, mitochondrial OS=Xenopus laevis GN=ppm1k PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 47/119 (39.50%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMW--AGTWRVGGVLAMSRAFGNRMLKQF-VVAEPEIQDLEV---DEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 339
            R  E++RI+ +GG V W   G   V G LAM+R+ G+  LK   V+AEPE + +++   D+GF  LVL +DG+  +V +++   +     +P+ AA+ LTE A   G+ DN T IVV F
Sbjct:  231 RKEEKLRIKKSGGFVTWNSLGQPNVNGRLAMTRSIGDLDLKSMGVIAEPETKRVKLQHTDDGF--LVLTTDGINFIVNSQEICDIINQCHDPKEAAQVLTEQAIQYGTEDNSTAIVVPF 347          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    4 PRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART----GEEPEIAARKLTETAFTRGSADNITCIVVRF 339
            PRE+ RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ ++   E  E ++LA DG+WDV+ NE+     ++     ++ E     + +T   +GS DN++ ++V F
Sbjct:  174 PREKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSRDNMSIVLVCF 295          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C08_ARATH (Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 1
Query:    4 PRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF-VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVA----LARTGEEPEIAARKLTETAF-TRGSADNITCIVVRFHHV 348
            P+ER RI+ +GGV+   G  R+ G L +SRAFG+R  K+F V A P+I   E+ E    ++L  DGLW+V    DAV     L + G      +R+L + A   R   DN T IV+ F  V
Sbjct:  233 PQERSRIQKSGGVISSNG--RLQGRLEVSRAFGDRHFKKFGVSATPDIHAFELTERENFMILGCDGLWEVFGPSDAVGFVQKLLKEGLHVSTVSRRLVKEAVKERRCKDNCTAIVIVFKRV 351          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPM1F_HUMAN (Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 44/116 (37.93%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPE-----IAARKLTETAFTRGSADNITCIVV 333
            R  E+ RIE  GG V     WRV G LA+SRA G+   K +V  E +     +    + L+LA DG +DVVP+++ V L ++    +       A +L   A  RGS DNIT +VV
Sbjct:  296 RQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQQGSGLRVAEELVAAARERGSHDNITVMVV 411          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   10 ERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF------VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR----TGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPEVEQE*ESSFMLHGVGL 420
            E++RIE  GGVV       + G L+++RA G+  +K        +  EPE+Q+ ++ E  E L++  DGLWDV+ ++ AV +AR       +PE  +R+L   A  R + DN+T IVV F        E  ++     S    G+ L
Sbjct:  228 EKVRIEKLGGVVY---DGYLNGQLSVARAIGDWHMKGPKGSACPLSPEPELQETDLSEDDEFLIMGCDGLWDVMSSQCAVTIARKELMIHNDPERCSRELVREALKRNTCDNLTVIVVCFSPDPPQRIEIRMQSRVRRSISAEGLNL 371          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 46/117 (39.32%), Postives = 59/117 (50.43%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALA------RTGEEPEIAARKLTETAFTRGSADNITCIVV 333
            R  E+ RIE  GG V     WRV G LA+SRA G+   K +V  E +    E+    + L+LA DG +DVVP+ +   L         G    I A +L   A  RGS DNIT +VV
Sbjct:  293 RQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDYLLLACDGFFDVVPHHEVTGLVHGHLLRHKGNGMRI-AEELVAVARDRGSHDNITVMVV 408          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPM1B_MOUSE (Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 1
Query:    4 PRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART----GEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPEVEQE 384
            P E+ RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ ++   E  E +VLA DG+WDV+ NE+     ++     ++ E     + +T   +GS DN++ ++V F +       P+V +E
Sbjct:  174 PVEKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGSRDNMSVVLVCFSNA------PKVSEE 304          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: PPM1B_RAT (Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 45/125 (36.00%), Postives = 66/125 (52.80%), Query Frame = 1
Query:    4 PRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALART----GEEPEIAARKLTETAFTRGSADNITCIVVRF 339
            P E+ RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ ++   E  E +VLA DG+WDV+ NE+      +     ++ E     + +T   +GS DN++ ++V F
Sbjct:  174 PMEKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFVVLACDGIWDVMSNEELCEFVNSRLEVSDDLENVCNWVVDTCLHKGSRDNMSIVLVCF 295          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C54_ORYSJ (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 45/153 (29.41%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   10 ERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF---------VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR----TGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPEVEQE*ESSFMLHGVGLSTL 429
            E++R+E+ GG V       + G+L ++RA G+  L+           + AEPE++ + + +  E L++ SDG+WDV  N++ V  AR       + +   R++ E A  RG+ DN+T ++V FH   E P +  V +    +  +   GL++L
Sbjct:  206 EKLRVESLGGYV---DDGYLNGLLGVTRALGDWHLEGMKEAGNPGGPLSAEPELKMITLTKDDEFLIIGSDGIWDVFSNQNVVDFARRRLQEHNDVKSCCREIVEEAIKRGATDNLTAVLVSFH--LEAPPQVRVSRPGRVARSISAEGLNSL 353          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C45_ARATH (Putative protein phosphatase 2C-like protein 45 OS=Arabidopsis thaliana GN=At3g27140 PE=5 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 1
Query:    7 RERMRIENAGG-------------VVMWAGTWR----VGGV----LAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR----TGEEPEI--AARKLTETAFTRGSADNITCIVV 333
            R  + I  AGG             VV  AG  R    VGGV    L + R  G+  LK++V+AEPE +   V+   E L+LAS GLWD V N++AV +AR      E+P +  A +KL + + +RGS D+I+ +++
Sbjct:   51 RHELEIAEAGGSSCVTALVSEGSLVVSNAGDCRAVMSVGGVAKGSLVVPRGIGDAQLKKWVIAEPETKISRVEHDHEFLILASHGLWDKVSNQEAVDIARPFCLRTEKPLLLAACKKLVDLSASRGSFDDISVMLI 186          
The following BLAST results are available for this feature:
BLAST of CX290520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PPM1K_XENLA7.194e-1239.50Protein phosphatase 1K, mitochondrial OS=Xenopus l... [more]
PPM1B_HUMAN7.194e-1236.00Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
P2C08_ARATH9.395e-1239.67Probable protein phosphatase 2C 8 OS=Arabidopsis t... [more]
PPM1F_HUMAN1.227e-1137.93Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE... [more]
P2C27_ARATH1.227e-1132.65Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
PPM1F_MOUSE1.603e-1139.32Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
PPM1B_MOUSE2.093e-1134.29Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE... [more]
PPM1B_RAT4.663e-1136.00Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm... [more]
P2C54_ORYSJ4.663e-1129.41Probable protein phosphatase 2C 54 OS=Oryza sativa... [more]
P2C45_ARATH6.090e-1136.76Putative protein phosphatase 2C-like protein 45 OS... [more]

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Properties
Property NameValue
Genbank descriptionC02025A12SK IF1 Citrus clementina cDNA clone C02025A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290520 ID=CX290520; Name=CX290520; organism=Citrus clementina; type=EST; length=678bp
CGGCCGAGGGAGCGGATGAGAATTGAAAATGCCGGAGGCGTTGTAATGTG
GGCAGGCACTTGGAGAGTAGGAGGTGTGCTAGCTATGTCTCGTGCTTTTG
GTAACCGCATGCTGAAGCAATTTGTCGTTGCGGAACCTGAGATCCAGGAC
CTTGAAGTAGATGAAGGATTTGAGCTGCTTGTGCTTGCAAGTGATGGACT
ATGGGATGTAGTACCCAATGAGGATGCTGTTGCACTTGCCCGAACAGGGG
AAGAACCTGAAATCGCAGCTCGGAAGTTAACGGAGACTGCTTTTACCCGA
GGCAGTGCTGACAACATAACGTGCATTGTAGTGAGATTCCACCACGTCAA
TGAAGATCCAGCCGAACCTGAAGTGGAGCAGGAGTAGGAATCTTCATTTA
TGTTGCATGGTGTAGGTTTATCGACCCTTTAGGCTGTAGATCATCTGGAA
ATCTGCACATGCATGGCTGAATGTGCATAGCAACAGGGAGGAAGGCGATT
TTTTTATTCATTGTTTCTTTTTTTTCCCCGCACCCCCCTAATTTGAACCT
TTCTGTATTGACTGCATATATTGAGTCTTGGTTCATTCCAGAATAACTAT
TCCTCTTCGCTCCATAATGTGGCCTGGTAATCTGTATGTCTAAATGCCCG
TTCTGGGTATTTCGGTCTTAAGTTATAA
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