CX290531

Overview
NameCX290531
Unique NameCX290531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_SYNS9 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9902) GN=pgk PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.478e-89
Identity = 162/219 (73.97%), Postives = 187/219 (85.39%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAEL 673
            ++ND  FA+KLA+LAD+YVNDAFG+AHRAHASTEGV KFLKPSVAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E+L++K D +L+GGGMIFTFYKA+G +VG SLVEEDKL+L   L  KAK+KGV LLLPTDVV+AD FA DANS++   TAIPDGWMGLD+GPDAIK F  AL   KT+IWNGPMGVFEFDKFAAGT AIA  LAE+
Sbjct:  128 EKNDSGFAEKLAALADVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLEALIDKCDKVLIGGGMIFTFYKARGLAVGKSLVEEDKLELAKELEAKAKAKGVELLLPTDVVLADNFAPDANSQIADVTAIPDGWMGLDIGPDAIKVFQAALADCKTVIWNGPMGVFEFDKFAAGTNAIATTLAEI 346          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_ANASP (Phosphoglycerate kinase OS=Anabaena sp. (strain PCC 7120) GN=pgk PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.478e-89
Identity = 161/219 (73.52%), Postives = 187/219 (85.39%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAEL 673
            ++NDPEFAKKLA+ AD YVNDAFG+AHRAHASTEGV KFL PSVAG+L++KEL YL  A+ NP++P AAI+GGSKVS+KIGVIE+LLEK D L++GGGMIFTFYKA+G +VG SLVEEDKL+L  SL  KAK +GVSLLLPTDVV+AD FA DANS+ V    IPDGWMGLD+GPD++K F  AL  TKT+IWNGPMGVFEFDKFAAGTEAIA  LAE+
Sbjct:  127 EKNDPEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQSAIENPQRPLAAIIGGSKVSSKIGVIETLLEKCDKLIIGGGMIFTFYKARGLNVGKSLVEEDKLELAKSLEAKAKERGVSLLLPTDVVLADNFAPDANSQTVSIENIPDGWMGLDIGPDSVKVFQAALADTKTVIWNGPMGVFEFDKFAAGTEAIAHTLAEI 345          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 5.520e-89
Identity = 162/220 (73.64%), Postives = 189/220 (85.91%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++NDPEFAKKLAS ADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYL GAVS PK+PF AIVGGSKVS+KI VIE L+EK D +++GGGMIFTFYKA+G  VGSSLVEEDKL+L  +L   AK+KGV LLLP+DVV+ADKF A+AN++ V   AIPDGWMGLD+GPD+IK+F +AL   KT++WNGPMGVFEF KFA GT AIA  L+EL+
Sbjct:  189 EKNDPEFAKKLASNADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVSAPKRPFVAIVGGSKVSSKITVIEKLMEKCDKIIIGGGMIFTFYKARGLKVGSSLVEEDKLELAKNLEAIAKAKGVQLLLPSDVVVADKFDANANTQTVSVEAIPDGWMGLDIGPDSIKTFQDALADAKTVVWNGPMGVFEFPKFAVGTVAIANTLSELT 408          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_SYNPX (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH8102) GN=pgk PE=3 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.606e-88
Identity = 160/220 (72.73%), Postives = 187/220 (85.00%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++ND  FA+KLA LA++YVNDAFG+AHRAHASTEGV KFLKP+VAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E+L++K D +L+GGGMIFTFYKA+G SVG SLVEEDKL+L   L  KAK+KGV LLLPTDVV+AD FA DANS+V   TAIPDGWMGLD+GPDA+K F +AL   +T+IWNGPMGVFEF+KFA GT AIA  LAELS
Sbjct:  128 EKNDAGFAEKLAGLAEVYVNDAFGAAHRAHASTEGVTKFLKPAVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLEALIDKCDKVLIGGGMIFTFYKARGLSVGKSLVEEDKLELAKELEAKAKAKGVELLLPTDVVLADNFAPDANSQVADVTAIPDGWMGLDIGPDAVKVFQDALGDCQTVIWNGPMGVFEFEKFATGTNAIATTLAELS 347          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_SYNJA (Phosphoglycerate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pgk PE=3 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 6.103e-88
Identity = 156/223 (69.96%), Postives = 189/223 (84.75%), Query Frame = 2
Query:    8 PRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            P  + NDPEFA+KLASLADL+VNDAFGSAHRAHAST GV  +L+P+VAG+L++KEL +L GA+ NP++P AAI+GGSKVSTKIGVIE LLEKVD LLLGGGMIFTFY+AQG   G SLVE DKLDL  SLMEKAK++GV LLLP DVV+AD+F  DAN++ V   AIP+ WMGLD+GP+++K+F  AL   KT++WNGPMGVFEFD+FAAGTEAIA+ LA+L+
Sbjct:  136 PEEEANDPEFARKLASLADLFVNDAFGSAHRAHASTAGVTAYLQPAVAGYLVEKELQFLSGAIENPQRPLAAIIGGSKVSTKIGVIERLLEKVDKLLLGGGMIFTFYQAQGIPTGKSLVETDKLDLARSLMEKAKARGVELLLPVDVVVADRFDKDANAQTVSIHAIPEDWMGLDIGPESVKAFQAALQGCKTVVWNGPMGVFEFDRFAAGTEAIARTLADLT 358          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_SYNPW (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH7803) GN=pgk PE=3 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.360e-87
Identity = 159/220 (72.27%), Postives = 186/220 (84.55%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++N+  FA+KLA LA++YVNDAFG+AHRAHASTEGV KFLKP+VAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E+L++K D +L+GGGMIFTFYKA+G SVG SLVEEDKL+L   L  KAK+KGV LLLPTDVV+AD FA DANS+V   TAIPDGWMGLD+GPDA+K F  AL   +T+IWNGPMGVFEF+KFA GT AIA  LAELS
Sbjct:  128 EKNEAGFAEKLAGLAEVYVNDAFGAAHRAHASTEGVTKFLKPAVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLEALIDKCDKVLIGGGMIFTFYKARGLSVGKSLVEEDKLELAKELEAKAKAKGVELLLPTDVVLADNFAPDANSQVADVTAIPDGWMGLDIGPDAVKVFQAALADCQTVIWNGPMGVFEFEKFATGTNAIATTLAELS 347          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_SYNR3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain RCC307) GN=pgk PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.029e-87
Identity = 158/220 (71.82%), Postives = 188/220 (85.45%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++N+  FA+KLA+LA++YVNDAFG+AHRAHASTEGV K+L PSVAG+LM+KEL YL GAV +PK+P AAIVGGSKVS+KIGV+E+L++K D +L+GGGMIFTFYKA+G SVG SLVEEDKL+L   L  KAK+KGV LLLPTDVV+AD FA DANS+V    AIP+GWMGLD+GPD+IK F +AL   KT+IWNGPMGVFEFDKFAAGT AIA  LAELS
Sbjct:  128 EKNESGFAEKLAALAEVYVNDAFGAAHRAHASTEGVTKYLSPSVAGYLMEKELQYLQGAVDDPKRPLAAIVGGSKVSSKIGVLEALIDKCDKVLIGGGMIFTFYKARGLSVGKSLVEEDKLELAKELEAKAKAKGVQLLLPTDVVLADNFAPDANSQVASIDAIPEGWMGLDIGPDSIKVFQDALGDCKTVIWNGPMGVFEFDKFAAGTNAIATTLAELS 347          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_SYNE7 (Phosphoglycerate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=pgk PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.029e-87
Identity = 157/218 (72.02%), Postives = 184/218 (84.40%), Query Frame = 2
Query:   23 NDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ND EFAK LASLAD+YVNDAFG+AHRAHAST GV ++L P VAG+L++KEL YL  A+ NP++P AAIVGGSKVS+KIGVIE+LL+K D LL+GGGMIFTFYKAQG SVG SLVEEDKLDL  SLM KA+ KGV LLLP DVV+ADKFA DAN+K V   AIPDGWMGLD+GP+++K F EAL   +++IWNGPMGVFEFD+FA GTEAIA+ LA L+
Sbjct:  130 NDAEFAKALASLADIYVNDAFGAAHRAHASTAGVTEYLSPCVAGYLLEKELQYLQAAIDNPQRPLAAIVGGSKVSSKIGVIETLLDKCDKLLIGGGMIFTFYKAQGLSVGGSLVEEDKLDLARSLMAKAQEKGVQLLLPVDVVVADKFAPDANAKTVAIDAIPDGWMGLDIGPESVKQFEEALADCRSVIWNGPMGVFEFDQFAVGTEAIARSLAGLT 347          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.167e-87
Identity = 156/220 (70.91%), Postives = 189/220 (85.91%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            ++N+PEFAKKLA+ ADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYL GAVSNPK+PF AIVGGSKVS+KI VIE+L+EK D +++GGGMIFTFYKA+   VGSSLVE+DK++L   L E AK+KGV LLLPTDVV+ADKF A+AN++ VP TAIPDGWMGLD+GPD++K+F++AL   KT++WNGPMGVFEF +    T +IA  LA L+
Sbjct:  188 EKNEPEFAKKLAANADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVSNPKRPFVAIVGGSKVSSKITVIEALMEKCDKIIIGGGMIFTFYKARALKVGSSLVEDDKIELAKKLEEMAKAKGVQLLLPTDVVVADKFDANANTQTVPITAIPDGWMGLDIGPDSVKTFNDALADAKTVVWNGPMGVFEFPQVRQRTVSIANTLAGLT 407          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_THEEB (Phosphoglycerate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 6.748e-87
Identity = 157/223 (70.40%), Postives = 188/223 (84.30%), Query Frame = 2
Query:    8 PRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            P  ++NDPEFAK+LA+ A++YVNDAFG+AHRAHAST GV ++L P VAGFLM+KEL+YL  A+ +P++P AAIVGGSKVS+KIGVIE+LLEKVD LL+GGGMIFTFYKA+G +VG SLVEEDKL+L   L  KA+ KGV LLLPTDVV+AD FA DANS+VV   AIPD WMGLD+GP ++K F EAL   KT+IWNGPMGVFEFD+FA GTEAIA+ LAEL+
Sbjct:  124 PGEEKNDPEFAKQLAACAEVYVNDAFGTAHRAHASTAGVTQYLSPCVAGFLMEKELEYLQNAIEHPRRPLAAIVGGSKVSSKIGVIEALLEKVDKLLIGGGMIFTFYKARGLNVGKSLVEEDKLELAKHLETKAQEKGVELLLPTDVVVADNFANDANSQVVSIEAIPDDWMGLDIGPASVKRFQEALQDCKTVIWNGPMGVFEFDQFAKGTEAIARYLAELT 346          
The following BLAST results are available for this feature:
BLAST of CX290531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_SYNS92.478e-8973.97Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_ANASP2.478e-8973.52Phosphoglycerate kinase OS=Anabaena sp. (strain PC... [more]
PGKH_VOLCA5.520e-8973.64Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGK_SYNPX1.606e-8872.73Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNJA6.103e-8869.96Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNPW1.360e-8772.27Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNR33.029e-8771.82Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNE73.029e-8772.02Phosphoglycerate kinase OS=Synechococcus elongatus... [more]
PGKH_CHLRE5.167e-8770.91Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_THEEB6.748e-8770.40Phosphoglycerate kinase OS=Thermosynechococcus elo... [more]

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Properties
Property NameValue
Genbank descriptionC02025B11SK IF1 Citrus clementina cDNA clone C02025B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290531 ID=CX290531; Name=CX290531; organism=Citrus clementina; type=EST; length=677bp
GATTCGGCCGAGGAGGAAGAGAAATGACCCAGAGTTTGCTAAGAAGCTAG
CTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGA
GCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGC
TGGTTTCCTTATGCAAAAGGAACTAGATTATCTTGTTGGAGCTGTTTCAA
ATCCCAAGAAACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCAACT
AAGATCGGTGTTATTGAATCACTTTTGGAGAAGGTTGACATTCTATTGCT
CGGTGGAGGAATGATCTTTACCTTTTACAAGGCCCAAGGACACTCTGTTG
GTTCATCCCTTGTTGAGGAAGACAAGCTTGATCTCGGTACGTCACTTATG
GAGAAGGCCAAATCTAAAGGGGTGTCTCTTCTGCTCCCTACTGATGTTGT
TATTGCTGACAAGTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAA
CGGCAATTCCAGATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATC
AAGTCATTCAGTGAAGCTTTGGATACTACTAAAACCATCATCTGGAATGG
ACCTATGGGTGTGTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAA
TTGCCAAGAAGCTTGCGGAGCTCAGCG
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