CX290531

Overview
NameCX290531
Unique NameCX290531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_CARHZ (Phosphoglycerate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pgk PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.371e-68
Identity = 127/221 (57.47%), Postives = 167/221 (75.57%), Query Frame = 2
Query:    8 PRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE 670
            P  ++NDPEFA+KLA LA+++V+DAFG+AHRAHAST G+A +L P+VAGFLM+KE+++L  A++NP++PF AI+GG+KVS KIGVIE+LL KVD+LL+GGGM  TF KA G+  G SLVEEDK++L   LM KAK  GV LLLP+DVV+A +  A   SK+V   +IP   M LD+G    K F E +   KT++WNGPMGVFE + F  GT A+A+ +AE
Sbjct:  122 PEEEKNDPEFARKLARLAEIFVSDAFGAAHRAHASTAGIASYL-PAVAGFLMEKEINFLSRALNNPERPFVAIIGGAKVSDKIGVIENLLGKVDVLLIGGGMANTFLKAMGYETGKSLVEEDKVNLAGELMNKAKEVGVKLLLPSDVVVAPRIEAGVPSKIVAVDSIPAEEMALDIGEKTAKHFREEILKAKTVVWNGPMGVFEVEPFDRGTVAVAEAVAE 341          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_CLOD6 (Phosphoglycerate kinase OS=Clostridium difficile (strain 630) GN=pgk PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.197e-67
Identity = 123/224 (54.91%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 RPRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELS 676
            R    +N+  F+K+LASLA+++VNDAFG+AHRAH ST G  +FL+  V G+L+QKEL +L  AV+NP +PF AI+GG+KVS K+ VI  LLEKVD L++GGGM +TF KAQG+ VG+SL+E DK++    +MEKAK+KGV+LLLP DVV+AD FA DA   V     + + +MGLD+GP  I +F + +  +KT++WNGPMGVFEF+ FA GT ++A+ +AEL+
Sbjct:  125 RKEETKNEENFSKELASLAEIFVNDAFGTAHRAHCSTVGAGEFLQERVCGYLIQKELKFLGEAVANPVRPFTAILGGAKVSDKLAVINELLEKVDNLIIGGGMAYTFLKAQGYEVGTSLLEIDKVEYAKEMMEKAKNKGVNLLLPVDVVMADHFAPDATPIVTEDANVKEDYMGLDMGPKTIANFVKTIKESKTVVWNGPMGVFEFENFANGTLSVARAMAELT 348          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_CHLPD (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=pgk PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.563e-67
Identity = 119/216 (55.09%), Postives = 171/216 (79.17%), Query Frame = 2
Query:   23 NDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE 670
            N+P+FAK+LASL +++VNDAFG+AHRAHASTEG+  ++  +VAG+L++KEL+YL  A+ NP++PF AI+GGSK+S KI V+E+L  KVD +L+GG M+FTF+KAQG +VG+SLVE++KLDL  +L+++A  KG++LLLP DV++A   ++DA+S V    ++ DG +G+D+GP  I+ +   +   +T++WNGPMGVFE D FA GT AIAK LAE
Sbjct:  127 NNPDFAKELASLGEIFVNDAFGTAHRAHASTEGITHYVPVAVAGYLIEKELNYLGKALDNPERPFVAILGGSKISGKIDVLENLFTKVDTVLIGGAMVFTFFKAQGLNVGNSLVEDNKLDLAQALLKQAADKGINLLLPDDVLVAATISSDASSHVEAVNSMSDGMIGVDIGPKTIEKYRNEILAARTVLWNGPMGVFEIDNFAEGTFAIAKALAE 342          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_CHLCH (Phosphoglycerate kinase OS=Chlorobium chlorochromatii (strain CaD3) GN=pgk PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.563e-67
Identity = 117/216 (54.17%), Postives = 168/216 (77.78%), Query Frame = 2
Query:   23 NDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE 670
            ND +FAK+LASL ++YVNDAFG+AHRAHASTEG+  +++ +VAGFL+++EL YL  A+  P++PF AI+GGSK+S KI V+E+L +KVD +L+GG M+FTF+KAQG+ VG SLVEE K++L  S++E+AK+KG+ LLLPTDVV+  + +ADA S V     +P+  +G+D+GP+   ++   +   +T++WNGPMGVFE D FA GT A+A+ LA+
Sbjct:  127 NDADFAKELASLGEIYVNDAFGTAHRAHASTEGITHYVQTAVAGFLIERELRYLGKALQEPERPFVAILGGSKISGKIDVLENLFKKVDTVLIGGAMVFTFFKAQGYEVGKSLVEESKIELALSILEQAKAKGIKLLLPTDVVVTAEISADAESSVASIADMPNNLIGVDIGPETAAAYRNEIIGARTVLWNGPMGVFELDNFATGTIAVAQALAD 342          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_CLONN (Phosphoglycerate kinase OS=Clostridium novyi (strain NT) GN=pgk PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.041e-67
Identity = 122/222 (54.95%), Postives = 164/222 (73.87%), Query Frame = 2
Query:    5 RPRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE 670
            R    +N+  F+K+LASLAD++VNDAFG+AHRAH ST GVA FL  +  G+L+QKEL +L  AV  P +PF AI+GG+KVS KI VI +LLEKVD L++GGGM +TF KAQG+++G SLVEEDK++    +M+KAK+KGV LLLP D V+ ++F A+          IP+G+MGLD+GP     +++A+ T KT++WNGPMGVFEF  FA GT A+A+ +AE
Sbjct:  124 RKEETKNEENFSKELASLADVFVNDAFGTAHRAHCSTVGVADFLNEAACGYLIQKELKFLGDAVETPVRPFVAILGGAKVSDKINVINNLLEKVDTLIIGGGMAYTFLKAQGYTIGKSLVEEDKVEYAKEMMDKAKAKGVKLLLPVDNVVGEEFDANTTPVTTEDANIPEGYMGLDIGPKTSALYADAVRTAKTVVWNGPMGVFEFANFAKGTIAVAEAMAE 345          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_ACIBL (Phosphoglycerate kinase OS=Acidobacteria bacterium (strain Ellin345) GN=pgk PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.041e-67
Identity = 127/218 (58.26%), Postives = 158/218 (72.48%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADAN-SKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLA 667
            ++NDP FAK+LASL +LYVNDAFGSAHRAHASTEG+  +++ S AG LMQKELDYL  A SNP KPF AI+GG+KVS KIGVI++L+ KVD +++GGGM +TF KAQG  +G SL E DKLDL   ++  A  +G+  LLP D V ADKF   A   ++    +IP   M LD+GP  +  FSE +   +TI+WNGPMGVFEFD FA GT AIAK +A
Sbjct:  131 EKNDPAFAKELASLCELYVNDAFGSAHRAHASTEGITHYVEKSAAGLLMQKELDYLGKATSNPAKPFVAILGGAKVSDKIGVIQNLMAKVDAIIIGGGMAYTFLKAQGQEIGKSLFEADKLDLAKQILADAHKRGLKFLLPVDHVTADKFDMHATPHQIGEGQSIPAEQMALDIGPKTVALFSEEIAKARTIVWNGPMGVFEFDNFAKGTRAIAKAVA 348          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_CLOK5 (Phosphoglycerate kinase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=pgk PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.547e-67
Identity = 121/222 (54.50%), Postives = 164/222 (73.87%), Query Frame = 2
Query:    5 RPRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE 670
            R    +N   F+K+LASL +++VNDAFG+AHRAH ST GV KFL  +V G+L+QKEL++L  A+ NP +PF AI+GG KVS KI VI +LLEKVD L++GGGM +TF +AQG+++G+S+VEEDK++    +++KAK KG+ LLLP D V+ DKF   A   +     I DG+MG+D+GP   K +++A+  +KTIIWNGPMGVFEF  FA GT A+AK +AE
Sbjct:  124 RIEETKNQDNFSKELASLGEIFVNDAFGTAHRAHCSTVGVTKFLPTAVCGYLIQKELEFLGNAIENPSRPFTAILGGVKVSDKINVINNLLEKVDTLIIGGGMSYTFARAQGYTIGTSVVEEDKIEYAKEMIDKAKEKGIKLLLPIDRVVTDKFDESAEPILEDDKNIKDGYMGMDIGPKTAKVYADAIKDSKTIIWNGPMGVFEFKNFAKGTFAVAKAMAE 345          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_CLOK1 (Phosphoglycerate kinase OS=Clostridium kluyveri (strain NBRC 12016) GN=pgk PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.547e-67
Identity = 121/222 (54.50%), Postives = 164/222 (73.87%), Query Frame = 2
Query:    5 RPRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE 670
            R    +N   F+K+LASL +++VNDAFG+AHRAH ST GV KFL  +V G+L+QKEL++L  A+ NP +PF AI+GG KVS KI VI +LLEKVD L++GGGM +TF +AQG+++G+S+VEEDK++    +++KAK KG+ LLLP D V+ DKF   A   +     I DG+MG+D+GP   K +++A+  +KTIIWNGPMGVFEF  FA GT A+AK +AE
Sbjct:  124 RIEETKNQDNFSKELASLGEIFVNDAFGTAHRAHCSTVGVTKFLPTAVCGYLIQKELEFLGNAIENPSRPFTAILGGVKVSDKINVINNLLEKVDTLIIGGGMSYTFARAQGYTIGTSVVEEDKIEYAKEMIDKAKEKGIKLLLPIDRVVTDKFDESAEPILEDDKNIKDGYMGMDIGPKTAKVYADAIKDSKTIIWNGPMGVFEFKNFAKGTFAVAKAMAE 345          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_PELPB (Phosphoglycerate kinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.939e-67
Identity = 115/221 (52.04%), Postives = 172/221 (77.83%), Query Frame = 2
Query:    8 PRRKRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE 670
            P  + NDP+FA++LASL ++YVNDAFG+AHRAHASTEG+  +++ +VAGFL+++EL YL  A+  P++PF AI+GGSK+S KI V+E+L +KVD +L+GG M+FTF+KAQG+ +G+SLVEE K++L   ++++AK+KG+ LLLP DV++A + +A A+      TAIP+  +G+D+GP   + +   + + +T++WNGPMGVFE D FAAGT A+A+ +AE
Sbjct:  122 PEEEANDPDFARELASLGEVYVNDAFGTAHRAHASTEGITHYVQTAVAGFLIERELLYLGKALQEPERPFVAILGGSKISGKIDVLENLFKKVDTVLIGGAMVFTFFKAQGYEIGNSLVEESKIELALKILDEAKNKGIKLLLPVDVIVAPEISATADCHSEMITAIPEEMIGVDIGPLTAEIYRNEILSARTVLWNGPMGVFEIDNFAAGTMAVAQAMAE 342          
BLAST of CX290531 vs. ExPASy Swiss-Prot
Match: PGK_SYMTH (Phosphoglycerate kinase OS=Symbiobacterium thermophilum GN=pgk PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.013e-66
Identity = 122/218 (55.96%), Postives = 164/218 (75.23%), Query Frame = 2
Query:   17 KRNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAE 670
            ++NDPEFA KLA L +++VNDAFG+AHRAHAST GVA  +   VAGFLMQKE+D +  A+S+P +PF AI+GG+KVS KI VIE+LL KVD L++GGGM  TF +A+G + G SLVEED++D    L+ K    G  +LLPTD+V+A +F ADA  KVVP  AIP+GWM LD+GP+  ++F++ +    T++WNGPMGVFE + FA GT A+A+ +A+
Sbjct:  124 EKNDPEFAAKLARLGEIFVNDAFGTAHRAHASTRGVADHMPVRVAGFLMQKEVDIMGKALSDPDRPFVAIIGGAKVSDKIMVIENLLTKVDRLIIGGGMANTFLRARGFATGKSLVEEDRVDTARELLAKG---GDKILLPTDLVVASEFKADAEQKVVPVDAIPEGWMALDIGPETARAFADVIRGAHTVVWNGPMGVFEMEPFARGTFAVAQAMAD 338          
The following BLAST results are available for this feature:
BLAST of CX290531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CARHZ5.371e-6857.47Phosphoglycerate kinase OS=Carboxydothermus hydrog... [more]
PGK_CLOD61.197e-6754.91Phosphoglycerate kinase OS=Clostridium difficile (... [more]
PGK_CHLPD1.563e-6755.09Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_CHLCH1.563e-6754.17Phosphoglycerate kinase OS=Chlorobium chlorochroma... [more]
PGK_CLONN2.041e-6754.95Phosphoglycerate kinase OS=Clostridium novyi (stra... [more]
PGK_ACIBL2.041e-6758.26Phosphoglycerate kinase OS=Acidobacteria bacterium... [more]
PGK_CLOK54.547e-6754.50Phosphoglycerate kinase OS=Clostridium kluyveri (s... [more]
PGK_CLOK14.547e-6754.50Phosphoglycerate kinase OS=Clostridium kluyveri (s... [more]
PGK_PELPB5.939e-6752.04Phosphoglycerate kinase OS=Pelodictyon phaeoclathr... [more]
PGK_SYMTH1.013e-6655.96Phosphoglycerate kinase OS=Symbiobacterium thermop... [more]

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Properties
Property NameValue
Genbank descriptionC02025B11SK IF1 Citrus clementina cDNA clone C02025B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290531 ID=CX290531; Name=CX290531; organism=Citrus clementina; type=EST; length=677bp
GATTCGGCCGAGGAGGAAGAGAAATGACCCAGAGTTTGCTAAGAAGCTAG
CTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGA
GCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGC
TGGTTTCCTTATGCAAAAGGAACTAGATTATCTTGTTGGAGCTGTTTCAA
ATCCCAAGAAACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCAACT
AAGATCGGTGTTATTGAATCACTTTTGGAGAAGGTTGACATTCTATTGCT
CGGTGGAGGAATGATCTTTACCTTTTACAAGGCCCAAGGACACTCTGTTG
GTTCATCCCTTGTTGAGGAAGACAAGCTTGATCTCGGTACGTCACTTATG
GAGAAGGCCAAATCTAAAGGGGTGTCTCTTCTGCTCCCTACTGATGTTGT
TATTGCTGACAAGTTTGCTGCTGATGCCAACAGCAAGGTGGTGCCAGCAA
CGGCAATTCCAGATGGTTGGATGGGCTTGGATGTTGGACCTGATGCCATC
AAGTCATTCAGTGAAGCTTTGGATACTACTAAAACCATCATCTGGAATGG
ACCTATGGGTGTGTTTGAATTTGATAAATTTGCTGCTGGCACTGAGGCAA
TTGCCAAGAAGCTTGCGGAGCTCAGCG
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