CX290533

Overview
NameCX290533
Unique NameCX290533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_ASHGO (RuvB-like helicase 1 OS=Ashbya gossypii GN=RVB1 PE=3 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.839e-87
Identity = 156/227 (68.72%), Postives = 199/227 (87.67%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            +GTK L+LDPTIY+++ +EKV+VGDVIYIE+NSGAVKRVGRSDA+ATEFDLEAEEYVPLPKGEVHKKKEI+QDVTLHDLD ANARPQGGQD++S+MGQ+MKP+KTEIT+KLR E+NKVV ++ID+G AELVPGVLFIDEV+MLD+E F++LNRALE  ++P+V+ A+NRG+  +RGT D+ S HGIP DL+DRL+I+RT  Y   E+  I+  R++VE + L++ +L
Sbjct:  170 KGTKTLRLDPTIYESIQREKVSVGDVIYIESNSGAVKRVGRSDAYATEFDLEAEEYVPLPKGEVHKKKEIIQDVTLHDLDVANARPQGGQDVISMMGQLMKPKKTEITEKLRHEVNKVVAKYIDQGVAELVPGVLFIDEVNMLDIEIFTFLNRALELEIAPVVVLASNRGMTTVRGTEDVVSAHGIPPDLIDRLLIVRTLPYTQDEIRVIIEKRSKVENLQLEQAAL 396          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_GIBZE (RuvB-like helicase 1 OS=Gibberella zeae GN=RVB1 PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.557e-86
Identity = 155/227 (68.28%), Postives = 195/227 (85.90%), Query Frame = 2
Query:    2 RGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGT-DMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            +G K+L+LDP+IY+A+ KE+V VGDVIYIEAN+GA KRVGRSDA+ATEFDLEAEEYVP+PKGEVHKKKEIVQDV+LHDLD AN+RPQGGQDI+S+MGQ+MKP+ TEITDKLR EINKVV+++ID+G AELVPGVLFIDE HMLD+ECF+YLNRALES ++PIV+ A+NRG+C IRGT D+ + HGIP D L R++II T  Y   E+ +I+ IR+  E + + + ++
Sbjct:  166 KGQKKLRLDPSIYEAIQKERVTVGDVIYIEANTGACKRVGRSDAYATEFDLEAEEYVPIPKGEVHKKKEIVQDVSLHDLDVANSRPQGGQDIMSMMGQLMKPKMTEITDKLRGEINKVVSKYIDQGVAELVPGVLFIDEAHMLDVECFTYLNRALESPIAPIVVLASNRGMCTIRGTDDIVAAHGIPSDFLARMLIIPTTPYEADEIKRIVRIRSTTEGVSVSDAAI 392          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB1_ENCCU (RuvB-like protein 1 OS=Encephalitozoon cuniculi GN=RVB1 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.874e-64
Identity = 117/224 (52.23%), Postives = 175/224 (78.12%), Query Frame = 2
Query:    8 TKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTD-MNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEES 676
            +K+LKL P++Y+ + K+++  GDV+YIE NSG +K++GRS+A   +FDLEA+ YVP+PKGEV K+KE++Q VTLHDLD ANARP G QD+LSL+ +++ PRKTEIT++LR ++N++VN +++ G AE+VPGVLFIDEVHMLD+ECF++L++ +ES LSP +IFA+N+G+  I+G+D +  P GI  DLLDR+VII  +        +I+  R + E + +D+++
Sbjct:  159 SKKLKLAPSLYEQIDKQRIVNGDVVYIEVNSGVIKKLGRSEAHMNDFDLEADTYVPIPKGEVLKRKEVMQSVTLHDLDMANARPSG-QDMLSLVFRILSPRKTEITERLRGDVNRMVNGYLENGNAEIVPGVLFIDEVHMLDVECFTFLHKVIESPLSPTIIFASNKGMAPIKGSDGLLGPFGITKDLLDRIVIISVKRNPDEANREIIRRRMKEEGLEMDDDA 381          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_NEUCR (RuvB-like helicase 2 OS=Neurospora crassa GN=rvb-2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.055e-53
Identity = 111/218 (50.92%), Postives = 148/218 (67.89%), Query Frame = 2
Query:   41 DALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            DA+ KE+V  GD+I I+ +SG + ++GRS A + ++D    +  ++  P GE+ K+KE+V  VTLH++D  N+R QG   + S           EI  ++R +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFSY+NRALES L+PIVI A+NRG   IRGTD  SPHG+PLD LDR+ II T  Y P E+ QIL IRAQ EE+ L  ++LA L
Sbjct:  178 DAMTKERVMAGDIISIDKSSGKITKLGRSYARSRDYDAMGVDTKFLQCPDGELQKRKEVVHTVTLHEIDVINSRTQGFLALFS-------GDTGEIRSEIRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSYINRALESDLAPIVIMASNRGHSKIRGTDYKSPHGLPLDFLDRISIINTHSYTPDELRQILTIRAQEEEVDLTPDALALL 388          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_USTMA (RuvB-like helicase 2 OS=Ustilago maydis GN=RVB2 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.509e-52
Identity = 111/222 (50.00%), Postives = 152/222 (68.47%), Query Frame = 2
Query:   20 KLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            +L   + D+L KEKV  GDVI I+  SG + ++GRS   A ++D    +  +V  P+GE+ ++K++V  V+LH++D  N+R QG   + S     +KP       +LR +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFS+LNRALES L+P+VI A+NRGIC IRGT   SPHGIP+DLLDR++II T+ Y  A++ QIL IRA  EE+ L  E+L
Sbjct:  168 ELGNKMIDSLQKEKVTAGDVIAIDKASGRITKLGRSFTRARDYDAMGSDTKFVQCPEGELQRRKDVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKP-------ELRDQINIKVGEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESELAPLVIMASNRGICRIRGTRFRSPHGIPIDLLDRVLIISTKPYELADLKQILTIRAAEEEVSLKPEAL 382          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_GIBZE (RuvB-like helicase 2 OS=Gibberella zeae GN=RVB2 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.509e-52
Identity = 107/218 (49.08%), Postives = 148/218 (67.89%), Query Frame = 2
Query:   41 DALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            DA+ KE+V  GD+I I+ +SG + ++GRS A + ++D    +  ++  P GE+ K+KE+V  VTLH++D  N+R QG   + S           EI  ++R +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFSY+NRALE  L+P+VI A+NRG   IRGTD  SPHG+PLD LDR+ II T  Y P E+ QI++IRAQ EE+ +  ++LA L
Sbjct:  169 DAMTKERVMAGDIISIDKSSGKITKLGRSYARSRDYDAMGVDTKFLQCPDGELQKRKEVVHTVTLHEIDVINSRTQGFLALFS-------GDTGEIRSEIRDQINTKVGEWKEEGKAEIVPGVLFIDEVHMLDIECFSYINRALEDDLAPVVIMASNRGNSRIRGTDYRSPHGLPLDFLDRVAIINTHSYTPEEIKQIISIRAQEEEVDVHPDALALL 379          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_EMENI (RuvB-like helicase 2 OS=Emericella nidulans GN=rvb2 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.534e-52
Identity = 109/218 (50.00%), Postives = 150/218 (68.81%), Query Frame = 2
Query:   41 DALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            D++ KE+V  GD+I I+ +SG + ++GRS A + ++D    +  +V  P+GE+  +KEIV  V+LH++D  N+R QG   + S           EI  ++R +IN  V  + +EG AE++PGVLFIDEVHMLD+EC+SY+NRALE+ L+PIVI A+NRG   IRGT  NSPHG+PLD LDR+VI+ TQ Y   E+ QILAIRAQ EEI L  ++LA L
Sbjct:  162 DSMTKERVMAGDIISIDKSSGKITKLGRSYARSRDYDAMGADVKFVQCPEGELQVRKEIVHTVSLHEIDVINSRSQGFLALFS-------GDTGEIRSEVRDQINVKVAEWKEEGKAEIIPGVLFIDEVHMLDIECYSYINRALEAELAPIVIMASNRGHSRIRGTTYNSPHGLPLDFLDRVVIVSTQHYSADEIRQILAIRAQEEEIDLSPDALALL 372          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_ASPFU (RuvB-like helicase 2 OS=Aspergillus fumigatus GN=rvb2 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.245e-51
Identity = 110/218 (50.46%), Postives = 149/218 (68.35%), Query Frame = 2
Query:   41 DALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            D++ KE+V  GDVI I+ +SG + ++GRS A + ++D    +  +V  P+GE+  +KEIV  V+LH++D  N+R QG   + S           EI  ++R +IN  V  + +EG AE++PGVLFIDEVHMLD+ECFSY+NRALE+ L+PIVI A+NRG   IRGT   SPHG+PLD LDR+VI+ TQ Y   E+ QILAIRAQ EEI L  ++LA L
Sbjct:  178 DSMTKERVMAGDVISIDKSSGKITKLGRSYARSRDYDAMGADTKFVQCPEGELQVRKEIVHTVSLHEIDVINSRTQGFLALFS-------GDTGEIRSEVRDQINTKVAEWKEEGKAEIIPGVLFIDEVHMLDIECFSYINRALEAELAPIVIMASNRGQARIRGTTYTSPHGLPLDFLDRVVIVSTQPYSGDEIRQILAIRAQEEEIDLSPDALALL 388          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_YARLI (RuvB-like helicase 2 OS=Yarrowia lipolytica GN=RVB2 PE=3 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.774e-51
Identity = 109/215 (50.70%), Postives = 148/215 (68.84%), Query Frame = 2
Query:   41 DALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFD-LEAE-EYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            D+L  EKV  GDVI I+  SG + ++GRS A A ++D L A+ ++V  P+GE+ ++KE++  V+LH++D  N+R QG   + S           EI  ++R++IN  V  + +EG AE+VPGVLFIDEVHMLDMECFS++NRALE  ++PIVI ATNRG    RGTD  SPHG+P+DLLDR++II T  Y P E+ QIL IRA  EE+ L  E+L
Sbjct:  176 DSLSNEKVTAGDVISIDKASGRITKLGRSFARARDYDALGADTKFVQCPEGELQQRKEVIHTVSLHEIDVINSRSQGFLALFS-------GDTGEIRPEVREQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDMECFSFINRALEDDMAPIVIMATNRGQSTTRGTDYKSPHGLPVDLLDRVIIIPTSPYSPDEVKQILQIRANEEEVELSPEAL 383          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_DANRE (RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.623e-51
Identity = 109/224 (48.66%), Postives = 150/224 (66.96%), Query Frame = 2
Query:   32 TIYD-------ALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEES 676
            TIYD       +L KE+V  GDVI I+  +G + ++GRS   A ++D    +  +V  P+GE+ K+KE+V  V+LH++D  N+R QG   + S           EI  ++R++IN  V+ + +EG AE++PGVLFIDEVHMLD+ECFS+LNRALES LSP++I ATNRGI  IRGT+  SPHGIP+D+LDRL+II T  Y   E  QIL IR + E++ L EE+
Sbjct:  170 TIYDLGTKMIESLSKERVQAGDVITIDKATGKISKLGRSFTRARDYDAMGAQTQFVQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFS-------GDTGEIKSEVREQINAKVSEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDLSPVLIMATNRGITRIRGTNYQSPHGIPIDMLDRLLIIATTPYTEKETRQILKIRCEEEDVELSEEA 386          
The following BLAST results are available for this feature:
BLAST of CX290533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB1_ASHGO1.839e-8768.72RuvB-like helicase 1 OS=Ashbya gossypii GN=RVB1 PE... [more]
RUVB1_GIBZE1.557e-8668.28RuvB-like helicase 1 OS=Gibberella zeae GN=RVB1 PE... [more]
RUVB1_ENCCU4.874e-6452.23RuvB-like protein 1 OS=Encephalitozoon cuniculi GN... [more]
RUVB2_NEUCR5.055e-5350.92RuvB-like helicase 2 OS=Neurospora crassa GN=rvb-2... [more]
RUVB2_USTMA2.509e-5250.00RuvB-like helicase 2 OS=Ustilago maydis GN=RVB2 PE... [more]
RUVB2_GIBZE2.509e-5249.08RuvB-like helicase 2 OS=Gibberella zeae GN=RVB2 PE... [more]
RUVB2_EMENI9.534e-5250.00RuvB-like helicase 2 OS=Emericella nidulans GN=rvb... [more]
RUVB2_ASPFU1.245e-5150.46RuvB-like helicase 2 OS=Aspergillus fumigatus GN=r... [more]
RUVB2_YARLI2.774e-5150.70RuvB-like helicase 2 OS=Yarrowia lipolytica GN=RVB... [more]
RUVB2_DANRE3.623e-5148.66RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02025C01SK IF1 Citrus clementina cDNA clone C02025C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290533 ID=CX290533; Name=CX290533; organism=Citrus clementina; type=EST; length=688bp
ACGAGGGACCAAGCAACTGAAGCTGGACCCTACTATTTATGATGCCTTGA
TCAAGGAGAAAGTAGCTGTTGGAGATGTTATATATATTGAAGCAAATAGC
GGAGCAGTCAAAAGGGTGGGAAGAAGTGATGCATTTGCTACTGAGTTTGA
CCTGGAAGCCGAAGAATATGTTCCACTACCTAAAGGGGAAGTTCACAAAA
AGAAAGAGATAGTTCAGGATGTAACACTACATGATCTAGATGCTGCAAAT
GCAAGGCCTCAAGGTGGGCAAGATATATTGTCCTTGATGGGTCAAATGAT
GAAGCCCAGAAAAACAGAAATTACTGACAAGTTACGACAAGAAATAAATA
AGGTTGTTAATCGGTTCATAGACGAGGGGGCGGCAGAGCTTGTTCCTGGA
GTTTTATTCATTGATGAGGTACATATGCTGGATATGGAGTGCTTTTCCTA
TCTGAATCGTGCTTTAGAAAGCTCACTATCTCCTATTGTAATCTTTGCTA
CAAATAGAGGAATATGTAACATAAGAGGGACGGATATGAATAGTCCTCAT
GGCATACCTCTGGACTTGTTGGACCGCTTGGTGATTATCCGGACACAAAT
TTATGGTCCTGCTGAGATGATTCAGATTTTGGCAATTCGGGCACAGGTTG
AGGAAATTGTTTTAGATGAAGAGAGTCTGGCCCACCTG
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