CX290533

Overview
NameCX290533
Unique NameCX290533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_SCHPO (RuvB-like helicase 2 OS=Schizosaccharomyces pombe GN=rvb2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.731e-51
Identity = 107/224 (47.77%), Postives = 152/224 (67.86%), Query Frame = 2
Query:   23 LDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            L   + D+L KEKV  GDVI I+ + G V ++GRS + A ++D    +  +V  P+GE+ K+KE+V  V+LHD+D  N+R QG   + S     +KP       ++R++IN  V+ + +EG AE+VPGVLF+DEVHMLD+ECFS+ NRALE  L+PIVI A+NRGI  IRGT+  SPHGIP+DLLDR++II T  Y   E+ +IL IR Q E++ ++  +L +L
Sbjct:  168 LGTKMIDSLTKEKVLAGDVISIDKSVGRVTKLGRSFSRARDYDAMGADTRFVQCPQGEIQKRKEVVHTVSLHDIDVINSRTQGFLALFSGDTGEIKP-------EVREQINTKVSEWREEGKAEIVPGVLFVDEVHMLDIECFSFFNRALEDDLAPIVIMASNRGITRIRGTNYRSPHGIPVDLLDRMLIISTLPYSHEEVKEILKIRCQEEDVDMEPSALDYL 384          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_DROPS (RuvB-like helicase 2 OS=Drosophila pseudoobscura pseudoobscura GN=rept PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.180e-51
Identity = 106/220 (48.18%), Postives = 146/220 (66.36%), Query Frame = 2
Query:   35 IYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            I +  +KEK+  GDVI I+  SG V ++GRS   A ++D    +  +V  P+GE+ K+KE+V  VTLH++D  N+R  G   + S           EI  ++R +IN  V  + +EG AE+ PGVLFIDEVHMLD+ECFSYLNRALES ++P+V+ ATNRGI  IRGT+  SPHGIP+DLLDR++IIRT  Y   E+ +IL IR + E+ V+  ++L  L
Sbjct:  174 IIECFMKEKIQAGDVITIDKASGKVNKLGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHGFLALFS-------GDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHMLDIECFSYLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRMIIIRTVPYSEKEVKEILKIRCEEEDCVMHPDALTIL 386          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_DROME (RuvB-like helicase 2 OS=Drosophila melanogaster GN=rept PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.348e-50
Identity = 104/220 (47.27%), Postives = 146/220 (66.36%), Query Frame = 2
Query:   35 IYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            I +  +KEK+  GDVI I+  SG V ++GRS   A ++D    +  +V  P+GE+ K+KE+V  VTLH++D  N+R  G   + S           EI  ++R +IN  V  + +EG AE+ PGVLFIDEVHMLD+ECFS+LNRALES ++P+V+ ATNRGI  IRGT+  SPHGIP+DLLDR++IIRT  Y   E+ +IL IR + E+ ++  ++L  L
Sbjct:  174 IIECFMKEKIQAGDVITIDKASGKVNKLGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHGFLALFS-------GDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHMLDIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRMIIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTIL 386          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_CANAL (RuvB-like helicase 2 OS=Candida albicans GN=RVB2 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.005e-50
Identity = 108/225 (48.00%), Postives = 146/225 (64.89%), Query Frame = 2
Query:   20 KLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +L   + + L KEKV  GDVI I+  SG + ++GRS   A ++D    E  +V  P+GE+ K+KE+V  ++LH++D  N+R QG   + S           EI  ++R +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFS++NRALE   SPIVI ATNRG+  IRGTD  SPHG+P+DLLDR + I T  Y   E+  IL+IRA  EE+ L  ++LA L
Sbjct:  174 ELGNKMIEGLTKEKVLAGDVISIDKASGKITKLGRSFTRARDYDAMGPETKFVQCPEGELQKRKEVVHTISLHEIDVINSRQQGFLALFS-------GDTGEIRPEVRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFSPIVIMATNRGVSRIRGTDYKSPHGMPMDLLDRSITIHTTSYTADEIRTILSIRATEEEVELSGDALALL 391          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_XENLA (RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.231e-50
Identity = 106/224 (47.32%), Postives = 148/224 (66.07%), Query Frame = 2
Query:   32 TIYD-------ALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEES 676
            TIYD       +L KEKV  GDVI I+  +G + ++GR+   A ++D    +  +V  P GE+ K+KE+V  V+LH++D  N+R QG   + S           EI  ++R++IN  V  + +EG AE++PGVLFIDEVHMLD+ECFS+LNRALES ++P++I ATNRGI  IRGT+  SPHGIP+DLLDRL+II T  Y   E  QIL IR + E++ + E++
Sbjct:  169 TIYDLGTKMIESLTKEKVQAGDVITIDKATGKITKLGRAFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFS-------GDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDMAPVLIMATNRGITRIRGTNYQSPHGIPIDLLDRLLIISTSPYNEKETKQILKIRCEEEDVDMSEDA 385          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_AEDAE (RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.231e-50
Identity = 105/217 (48.39%), Postives = 145/217 (66.82%), Query Frame = 2
Query:   35 IYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            I +  +KEK+  GDVI I+  SG V ++GRS   A ++D    +  +V  P+GE+ K+KE+V  VTLH++D  N+R  G    L+L          EI  ++R +IN  V  + +EG AE+ PGVLFIDE HMLD+ECFS+LNRALES ++P+VI ATNRGI  IRGT+  SPHGIP+DLLDR++IIRT  Y   E+ +IL IR + E+  ++ E+L
Sbjct:  174 IIECFMKEKIQAGDVITIDKASGKVSKLGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHG---FLALFAG----DTGEIKQEVRDQINSKVMEWREEGKAEINPGVLFIDEAHMLDIECFSFLNRALESDMAPVVIMATNRGITKIRGTNYRSPHGIPIDLLDRMIIIRTVPYSAKEIKEILKIRCEEEDCQINNEAL 383          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_YEAST (RuvB-like protein 2 OS=Saccharomyces cerevisiae GN=RVB2 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.522e-49
Identity = 106/222 (47.75%), Postives = 147/222 (66.22%), Query Frame = 2
Query:   20 KLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            +L   + D L KEKV  GDVI I+  SG + ++GRS A + ++D    +  +V  P+GE+ K+K +V  V+LH++D  N+R QG    L+L          EI  ++R +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFS++NRALE   +PIV+ ATNRG+   RGT+  SPHG+PLDLLDR +II T+ Y   E+  IL+IRAQ EE+ L  ++L
Sbjct:  170 ELGNKMIDGLTKEKVLAGDVISIDKASGKITKLGRSFARSRDYDAMGADTRFVQCPEGELQKRKTVVHTVSLHEIDVINSRTQG---FLALF----TGDTGEIRSEVRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIVMMATNRGVSKTRGTNYKSPHGLPLDLLDRSIIITTKSYNEQEIKTILSIRAQEEEVELSSDAL 384          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_ASHGO (RuvB-like helicase 2 OS=Ashbya gossypii GN=RVB2 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.988e-49
Identity = 108/222 (48.65%), Postives = 146/222 (65.77%), Query Frame = 2
Query:   20 KLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            +L   + D L KEKV  GDVI I+   G + ++GRS A + ++D    +  +V  P+GE+ K+K +V  V+LH++D  N+R QG    L+L          EI  + R +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFS++NRALE   +PIVI ATNRGI   RGT+  SPHG+PLDLLDR +II TQ Y   E+  IL+IR+Q EE+ L E++L
Sbjct:  169 ELGNKMIDGLTKEKVLAGDVISIDKACGKITKLGRSFARSRDYDAMGPDTKFVQCPEGELQKRKSVVHTVSLHEIDVINSRTQG---FLALF----TGDTGEIRSEDRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIVIMATNRGISKTRGTNYKSPHGLPLDLLDRSIIITTQNYSEQEIKTILSIRSQEEEVELTEDAL 383          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_DEBHA (RuvB-like helicase 2 OS=Debaryomyces hansenii GN=RVB2 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.429e-49
Identity = 107/225 (47.56%), Postives = 145/225 (64.44%), Query Frame = 2
Query:   20 KLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            +L   + + L KEKV  GDVI I+  SG + ++G+S   A ++D    E  +V  P+GE+ K+KE+V  V+LH++D  N+R QG   + S           EI  ++R +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFS++NRALE   +PIVI ATNRGI   RGT+  SPHG+P+DLLDR +II T  Y   E+  IL IRA  EE+ L  ++LA L
Sbjct:  171 ELGNKMIEGLTKEKVLAGDVISIDKASGKITKLGKSFTRARDYDAMGPETKFVQCPEGELQKRKEVVHTVSLHEIDVINSRQQGFLALFS-------GDTGEIRSEVRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDDFAPIVIMATNRGISKTRGTNYKSPHGLPMDLLDRSIIIHTAPYNADEIRTILLIRATEEEVELTGDALALL 388          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_CANGA (RuvB-like helicase 2 OS=Candida glabrata GN=RVB2 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.784e-49
Identity = 106/222 (47.75%), Postives = 145/222 (65.32%), Query Frame = 2
Query:   20 KLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            +L   + D L KEKV  GDVI I+  SG + ++GRS A + ++D    +  +V  P+GE+ K+K +V  V+LH++D  N+R QG    L+L          EI  ++R +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFS++NRALE   +PI++ ATNRGI   RGT+  SPHG+PLDLLDR +II T  Y   E+  IL IRAQ EE+ L  ++L
Sbjct:  171 ELGNKMIDGLTKEKVLAGDVISIDKASGKITKLGRSFARSRDYDAMGYDTKFVQCPEGELQKRKTVVHTVSLHEIDVINSRTQG---FLALF----TGDTGEIRSEVRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIIMMATNRGISKTRGTNYKSPHGLPLDLLDRSIIITTSNYNEEEIKTILTIRAQEEEVELSPDAL 385          
The following BLAST results are available for this feature:
BLAST of CX290533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB2_SCHPO4.731e-5147.77RuvB-like helicase 2 OS=Schizosaccharomyces pombe ... [more]
RUVB2_DROPS6.180e-5148.18RuvB-like helicase 2 OS=Drosophila pseudoobscura p... [more]
RUVB2_DROME2.348e-5047.27RuvB-like helicase 2 OS=Drosophila melanogaster GN... [more]
RUVB2_CANAL4.005e-5048.00RuvB-like helicase 2 OS=Candida albicans GN=RVB2 P... [more]
RUVB2_XENLA5.231e-5047.32RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1[more]
RUVB2_AEDAE5.231e-5048.39RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3... [more]
RUVB2_YEAST1.522e-4947.75RuvB-like protein 2 OS=Saccharomyces cerevisiae GN... [more]
RUVB2_ASHGO1.988e-4948.65RuvB-like helicase 2 OS=Ashbya gossypii GN=RVB2 PE... [more]
RUVB2_DEBHA4.429e-4947.56RuvB-like helicase 2 OS=Debaryomyces hansenii GN=R... [more]
RUVB2_CANGA5.784e-4947.75RuvB-like helicase 2 OS=Candida glabrata GN=RVB2 P... [more]

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Properties
Property NameValue
Genbank descriptionC02025C01SK IF1 Citrus clementina cDNA clone C02025C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290533 ID=CX290533; Name=CX290533; organism=Citrus clementina; type=EST; length=688bp
ACGAGGGACCAAGCAACTGAAGCTGGACCCTACTATTTATGATGCCTTGA
TCAAGGAGAAAGTAGCTGTTGGAGATGTTATATATATTGAAGCAAATAGC
GGAGCAGTCAAAAGGGTGGGAAGAAGTGATGCATTTGCTACTGAGTTTGA
CCTGGAAGCCGAAGAATATGTTCCACTACCTAAAGGGGAAGTTCACAAAA
AGAAAGAGATAGTTCAGGATGTAACACTACATGATCTAGATGCTGCAAAT
GCAAGGCCTCAAGGTGGGCAAGATATATTGTCCTTGATGGGTCAAATGAT
GAAGCCCAGAAAAACAGAAATTACTGACAAGTTACGACAAGAAATAAATA
AGGTTGTTAATCGGTTCATAGACGAGGGGGCGGCAGAGCTTGTTCCTGGA
GTTTTATTCATTGATGAGGTACATATGCTGGATATGGAGTGCTTTTCCTA
TCTGAATCGTGCTTTAGAAAGCTCACTATCTCCTATTGTAATCTTTGCTA
CAAATAGAGGAATATGTAACATAAGAGGGACGGATATGAATAGTCCTCAT
GGCATACCTCTGGACTTGTTGGACCGCTTGGTGATTATCCGGACACAAAT
TTATGGTCCTGCTGAGATGATTCAGATTTTGGCAATTCGGGCACAGGTTG
AGGAAATTGTTTTAGATGAAGAGAGTCTGGCCCACCTG
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