CX290533

Overview
NameCX290533
Unique NameCX290533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_KLULA (RuvB-like helicase 2 OS=Kluyveromyces lactis GN=RVB2 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.289e-48
Identity = 106/222 (47.75%), Postives = 146/222 (65.77%), Query Frame = 2
Query:   20 KLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            +L   + + L KEKV  GDVI I+  SG + ++GRS A + ++D    +  +V  P+GE+ K+K +V  V+LH++D  N+R QG    L+L          EI  ++R +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFS++NRALE   +PIVI ATNRGI   RGT+  SPHG+PLDLLDR +II T+ Y  +E+  IL IR+  EE+ L  E+L
Sbjct:  168 ELGNKMIEGLTKEKVLAGDVISIDKASGKITKLGRSFARSRDYDAMGADTKFVQCPEGELQKRKTVVHTVSLHEIDVINSRTQG---FLALF----TGDTGEIRSEVRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIVIMATNRGISKTRGTNYKSPHGLPLDLLDRSIIITTKNYDASEIKTILTIRSTEEEVELSPEAL 382          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_MOUSE (RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.683e-48
Identity = 103/224 (45.98%), Postives = 146/224 (65.18%), Query Frame = 2
Query:   32 TIYD-------ALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEES 676
            TIYD       +L K+KV  GDVI I+  +G + ++GRS   A ++D    +  +V  P GE+ K+KE+V  V+LH++D  N+R QG   + S           EI  ++R++IN  V  + +EG AE++PGVLFIDEVHMLD+E FS+LNRALES ++P++I ATNRGI  IRGT   SPHGIP+DLLDRL+I+ T  Y   +  QIL IR + E++ + E++
Sbjct:  170 TIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFS-------GDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEEEDVEMSEDA 386          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_BOVIN (RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.683e-48
Identity = 103/224 (45.98%), Postives = 146/224 (65.18%), Query Frame = 2
Query:   32 TIYD-------ALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEES 676
            TIYD       +L K+KV  GDVI I+  +G + ++GRS   A ++D    +  +V  P GE+ K+KE+V  V+LH++D  N+R QG   + S           EI  ++R++IN  V  + +EG AE++PGVLFIDEVHMLD+E FS+LNRALES ++P++I ATNRGI  IRGT   SPHGIP+DLLDRL+I+ T  Y   +  QIL IR + E++ + E++
Sbjct:  170 TIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFS-------GDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDKKQILRIRCEEEDVEMSEDA 386          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_HUMAN (RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.198e-48
Identity = 103/224 (45.98%), Postives = 146/224 (65.18%), Query Frame = 2
Query:   32 TIYD-------ALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEES 676
            TIYD       +L K+KV  GDVI I+  +G + ++GRS   A ++D    +  +V  P GE+ K+KE+V  V+LH++D  N+R QG   + S           EI  ++R++IN  V  + +EG AE++PGVLFIDEVHMLD+E FS+LNRALES ++P++I ATNRGI  IRGT   SPHGIP+DLLDRL+I+ T  Y   +  QIL IR + E++ + E++
Sbjct:  170 TIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFS-------GDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDA 386          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_DICDI (RuvB-like helicase 2 OS=Dictyostelium discoideum GN=rvb2 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 100/221 (45.25%), Postives = 149/221 (67.42%), Query Frame = 2
Query:   23 LDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            L   + D+L KEKV  GD+I I+  +G + ++GRS +   + ++   +  ++  P+GE+ +++     V+LH++D  N+R QG   + +  G +      EI  ++R++IN+ V  + +EG AE+VPGVLFIDEVHMLD+ECFSYLNRALE  +SPI+I ATNRG   IRGTD  +PHGIPLDLLDRL+II TQ Y   ++ +IL IR + E++ + E++L
Sbjct:  170 LGAKMIDSLTKEKVQNGDIIRIDKGTGKITKLGRSLSRVRDHEISGSKVNFIECPEGEIQQRRTETHTVSLHEIDVINSRAQGFFALFA--GDI-----GEIKSEVREQINQKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSYLNRALEDDMSPILIIATNRGNTTIRGTDYKAPHGIPLDLLDRLLIINTQPYTEKDIYKILKIRCEEEDVDIQEDAL 383          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_CRYNE (RuvB-like helicase 2 OS=Cryptococcus neoformans GN=RVB2 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.352e-48
Identity = 105/221 (47.51%), Postives = 144/221 (65.16%), Query Frame = 2
Query:   23 LDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEE--YVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESL 679
            L   + D L KEKV  GDV+ I+  SG + ++GRS   A ++D    +  +V  P GE+  +KE+V  V+LH++D  N+R QG    L+L          EI  +LR +IN  V  + +EG AE+VPGVLFIDEVHMLD+ECFS+LNRA+E+ L+P+V+ A+NRGI  IRGT   SPHGIP DLLDR++II T  Y   EM +I+ IRA+ E++ L   +L
Sbjct:  172 LGSKMIDQLQKEKVLAGDVVSIDKASGRISKLGRSFGRAKDYDAMGADTRFVACPDGELQTRKEVVHTVSLHEIDVINSRTQG---FLALFAG----DTGEIKPELRAQINGKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRAMENELAPLVVMASNRGITRIRGTKYKSPHGIPADLLDRMLIISTNRYEEDEMREIVKIRAEEEDVRLSPAAL 385          
BLAST of CX290533 vs. ExPASy Swiss-Prot
Match: RUVB2_ENCCU (RuvB-like helicase 2 OS=Encephalitozoon cuniculi GN=RVB2 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 88/219 (40.18%), Postives = 134/219 (61.19%), Query Frame = 2
Query:   47 LIKEKVAVGDVIYIEANSGAVKRVG-----RSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRFIDEGAAELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNIRGTDMNSPHGIPLDLLDRLVIIRTQIYGPAEMIQILAIRAQVEEIVLDEESLAHL 688
            L KEKV+ GDVI I    G V ++G     RSD   T+       +VP P+GE+ +  E  Q+++LHD+D  N++ +G   + S           EI  + R E+NK V  +I+EG AE+V GVLFIDEVHMLD+E F++LN+A+E    P+++ +TN+G C +RGTD  SP+GIP D +DR +II  + +   ++  IL  R   E+I++D++++  L
Sbjct:  158 LDKEKVSAGDVIRIVRERGRVYKIGTSMVKRSDVVGTD-----TRFVPCPEGELIRITEETQEISLHDIDVVNSKAEGYLALFS-------GETGEIRAETRDEVNKKVWGWINEGKAEIVRGVLFIDEVHMLDIESFAFLNKAVEEDFCPVILVSTNKGECIVRGTDEPSPYGIPRDFIDRALIISMEKHCRRDLEAILRHRILEEDILIDDDAVDRL 364          
The following BLAST results are available for this feature:
BLAST of CX290533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB2_KLULA1.289e-4847.75RuvB-like helicase 2 OS=Kluyveromyces lactis GN=RV... [more]
RUVB2_MOUSE1.683e-4845.98RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3[more]
RUVB2_BOVIN1.683e-4845.98RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3[more]
RUVB2_HUMAN2.198e-4845.98RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3[more]
RUVB2_DICDI6.395e-4845.25RuvB-like helicase 2 OS=Dictyostelium discoideum G... [more]
RUVB2_CRYNE8.352e-4847.51RuvB-like helicase 2 OS=Cryptococcus neoformans GN... [more]
RUVB2_ENCCU1.023e-3740.18RuvB-like helicase 2 OS=Encephalitozoon cuniculi G... [more]

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Properties
Property NameValue
Genbank descriptionC02025C01SK IF1 Citrus clementina cDNA clone C02025C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290533 ID=CX290533; Name=CX290533; organism=Citrus clementina; type=EST; length=688bp
ACGAGGGACCAAGCAACTGAAGCTGGACCCTACTATTTATGATGCCTTGA
TCAAGGAGAAAGTAGCTGTTGGAGATGTTATATATATTGAAGCAAATAGC
GGAGCAGTCAAAAGGGTGGGAAGAAGTGATGCATTTGCTACTGAGTTTGA
CCTGGAAGCCGAAGAATATGTTCCACTACCTAAAGGGGAAGTTCACAAAA
AGAAAGAGATAGTTCAGGATGTAACACTACATGATCTAGATGCTGCAAAT
GCAAGGCCTCAAGGTGGGCAAGATATATTGTCCTTGATGGGTCAAATGAT
GAAGCCCAGAAAAACAGAAATTACTGACAAGTTACGACAAGAAATAAATA
AGGTTGTTAATCGGTTCATAGACGAGGGGGCGGCAGAGCTTGTTCCTGGA
GTTTTATTCATTGATGAGGTACATATGCTGGATATGGAGTGCTTTTCCTA
TCTGAATCGTGCTTTAGAAAGCTCACTATCTCCTATTGTAATCTTTGCTA
CAAATAGAGGAATATGTAACATAAGAGGGACGGATATGAATAGTCCTCAT
GGCATACCTCTGGACTTGTTGGACCGCTTGGTGATTATCCGGACACAAAT
TTATGGTCCTGCTGAGATGATTCAGATTTTGGCAATTCGGGCACAGGTTG
AGGAAATTGTTTTAGATGAAGAGAGTCTGGCCCACCTG
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