CX290538

Overview
NameCX290538
Unique NameCX290538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig300 contig Ccv1_Contig300:1..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_HUMIN (Protein disulfide-isomerase OS=Humicola insolens PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.001e-31
Identity = 75/169 (44.38%), Postives = 107/169 (63.31%), Query Frame = 3
Query:  111 ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKL-AKHLRG--VDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN----ASIPFKIQKPTSAPKTEKPTS 596
            E+T + IK F +DF+ GK++P  KS+PIPE  +G V +VV  N++EIVLD++KDVL+E YAPWCGHC+A  P Y +L A + +    D +VIAK+D T N+    +  GFPTI  +PAG K   P+     RTV  L KF+ +N    A+I    ++ +SA +T   T+
Sbjct:  322 EITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPDEIQGFPTIKLYPAGAKG-QPVTYSGSRTVEDLIKFIAENGKYKAAISEDAEETSSATETTTETA 488          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA3_MOUSE (Protein disulfide-isomerase A3 OS=Mus musculus GN=Pdia3 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.001e-31
Identity = 78/189 (41.27%), Postives = 111/189 (58.73%), Query Frame = 3
Query:   42 TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSE 599
            TGE P V   T   +  K ++  E + D   ++ F +++ +G +K + KS+PIPE+N+G VK+VV  NFD+IV +E KDVL+E YAPWCGHC+  EP Y +L + L    +IVIAKMD T N+     +  GFPTI F PA NK   P   +  R +     +L++ A+ P  IQ+    PK +K   E
Sbjct:  320 TGEVPVVAIRTAKGE--KFVMQEEFSRDGKALEQFLQEYFDGNLKRYLKSEPIPESNEGPVKVVVAENFDDIVNEEDKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVKGFPTIYFSPA-NKKLTPKKYEGGRELNDFISYLQREATNPPIIQE--EKPKKKKKAQE 503          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI2_CAEEL (Protein disulfide-isomerase 2 OS=Caenorhabditis elegans GN=pdi-2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.308e-31
Identity = 74/174 (42.53%), Postives = 105/174 (60.34%), Query Frame = 3
Query:   21 VSEYFGIT-GEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 533
            + E+FG+   E P +   +  +D  K   D  E+T + I  F +++L+G VKP   S+ IPE  D + VKI+VG NF+++  D +K+VL+E YAPWCGHC+   PT++KL +     +SIVIAKMD T NE    K   FPTI FFPAG+     ++   DRT+    KFL+ N
Sbjct:  297 IMEFFGLKKDELPAIRLISLEEDMTKFKPDFEEITTENISKFTQNYLDGSVKPHLMSEDIPEDWDKNPVKILVGKNFEQVARDNTKNVLVEFYAPWCGHCKQLAPTWDKLGEKFADDESIVIAKMDSTLNEVEDVKIQSFPTIKFFPAGSNKV--VDYTGDRTIEGFTKFLETN 468          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI1_SCHPO (Putative protein disulfide-isomerase C1F5.02 OS=Schizosaccharomyces pombe GN=SPAC1F5.02 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.308e-31
Identity = 74/160 (46.25%), Postives = 107/160 (66.88%), Query Frame = 3
Query:  111 ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI-PFKIQKPT-SAPKTE 584
            ELT   +  F  DF++GK++P  KS PIPE+ + D+ ++V +NFD+IV+DE+KDVL+E YAPWCGHC+   PTY KLA+      ++V+AK+D T N+   + S GFPTI+FF A +K  +P+  + DRT+  L  F+ K+AS  P K +K +  AP  E
Sbjct:  323 ELTAKAMTKFVGDFVDGKLQPKIKSQPIPESQE-DLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDISVSIS-GFPTIMFFKANDK-VNPVRYEGDRTLEDLSAFIDKHASFEPIKKEKESVPAPDLE 479          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA3_RAT (Protein disulfide-isomerase A3 OS=Rattus norvegicus GN=Pdia3 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.970e-31
Identity = 78/189 (41.27%), Postives = 110/189 (58.20%), Query Frame = 3
Query:   42 TGEAPKVLAYTGNDDAKKHILDGELTLD--KIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSE 599
            TGE P V   T   +  K ++  E + D   ++ F +++ +G +K + KS+PIPETN+G VK+VV  +FD+IV  E KDVL+E YAPWCGHC+  EP Y +L + L    +IVIAKMD T N+     +  GFPTI F PA NK   P   +  R +     +L++ A+ P  IQ+    PK +K   E
Sbjct:  320 TGEIPVVAIRTAKGE--KFVMQEEFSRDGKALERFLQEYFDGNLKRYLKSEPIPETNEGPVKVVVAESFDDIVNAEDKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVKGFPTIYFSPA-NKKLTPKKYEGGRELNDFISYLQREATNPPIIQE--EKPKKKKKAQE 503          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA1_RAT (Protein disulfide-isomerase OS=Rattus norvegicus GN=P4hb PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.599e-29
Identity = 72/172 (41.86%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 527
            + E+FG+  E  P V   T  ++  K+  +  ELT +KI  F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KFL+
Sbjct:  303 ILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEKITQFCHHFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKFLE 473          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA1_MOUSE (Protein disulfide-isomerase OS=Mus musculus GN=P4hb PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.562e-29
Identity = 71/172 (41.28%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 527
            + E+FG+  E  P V   T  ++  K+  +  ELT +KI  F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE K+V +E YAPWCGHC+   P ++KL +  +  ++I+IAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KFL+
Sbjct:  303 ILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKIKPHLMSQEVPEDWDKQPVKVLVGANFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIIIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKFLE 473          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA1_CRIGR (Protein disulfide-isomerase OS=Cricetulus griseus GN=P4HB PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.562e-29
Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 527
            + E+FG+  E  P V   T  ++  K+  +  ELT +KI  F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE K+V +E YAPWCGHC+   P ++KL +  +  ++I+IAKMD T NE    K   FPT+ FFPA       I+ + +RT+    KFL+
Sbjct:  303 ILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIIIAKMDSTANEVEAVKVHSFPTLKFFPA-TADRTVIDYNGERTLDGFKKFLE 473          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA4_CAEEL (Probable protein disulfide-isomerase A4 OS=Caenorhabditis elegans GN=C14B9.2 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.652e-29
Identity = 74/163 (45.40%), Postives = 102/163 (62.58%), Query Frame = 3
Query:   84 DAKKHIL-----DGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 551
            D KK+ +     DGEL  + ++ F +    GK K   KS P P+ + G VK VVG+NFD+IV DESKDVL+E YAPWCGHC++FE  Y +LA+ L+    ++V+AKMD T N+   +   +GFPTI F PAG KS +PI    +R +  L KF+ K+    F+
Sbjct:  453 DGKKYPMNPDEFDGELD-ENLEAFMKQISSGKAKAHVKSAPAPKDDKGPVKTVVGSNFDKIVNDESKDVLIEFYAPWCGHCKSFESKYVELAQALKKTQPNVVLAKMDATINDAPSQFAVEGFPTIYFAPAGKKS-EPIKYSGNRDLEDLKKFMTKHGVKSFQ 613          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA1_MACFU (Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.652e-29
Identity = 73/174 (41.95%), Postives = 103/174 (59.20%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDV--DRTVVALYKFLK 527
            + E+FG+  E  P V   T  ++  K+  +  ELT ++I  F   FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE+K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA   S D   +D   +RT+    KFL+
Sbjct:  303 ILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEEVAFDENKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAIKVHSFPTLKFFPA---SVDRTVIDYNGERTLDGFKKFLE 473          
The following BLAST results are available for this feature:
BLAST of CX290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PDI_HUMIN1.001e-3144.38Protein disulfide-isomerase OS=Humicola insolens P... [more]
PDIA3_MOUSE1.001e-3141.27Protein disulfide-isomerase A3 OS=Mus musculus GN=... [more]
PDI2_CAEEL1.308e-3142.53Protein disulfide-isomerase 2 OS=Caenorhabditis el... [more]
PDI1_SCHPO1.308e-3146.25Putative protein disulfide-isomerase C1F5.02 OS=Sc... [more]
PDIA3_RAT4.970e-3141.27Protein disulfide-isomerase A3 OS=Rattus norvegicu... [more]
PDIA1_RAT1.599e-2941.86Protein disulfide-isomerase OS=Rattus norvegicus G... [more]
PDIA1_MOUSE3.562e-2941.28Protein disulfide-isomerase OS=Mus musculus GN=P4h... [more]
PDIA1_CRIGR3.562e-2941.28Protein disulfide-isomerase OS=Cricetulus griseus ... [more]
PDIA4_CAEEL4.652e-2945.40Probable protein disulfide-isomerase A4 OS=Caenorh... [more]
PDIA1_MACFU4.652e-2941.95Protein disulfide-isomerase OS=Macaca fuscata fusc... [more]

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Properties
Property NameValue
Genbank descriptionC02025C08SK IF1 Citrus clementina cDNA clone C02025C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290538 ID=CX290538; Name=CX290538; organism=Citrus clementina; type=EST; length=661bp
ATGAAGATGTCGGAAAGCCTGTTTCAGAGTATTTTGGCATCACTGGGGAA
GCTCCCAAAGTTCTTGCATACACGGGGAATGATGACGCTAAAAAACATAT
CCTGGATGGAGAGTTGACCTTGGATAAAATTAAGACTTTTGGAGAGGATT
TCCTCGAAGGCAAGGTTAAGCCTTTCTTTAAGTCTGATCCAATTCCAGAA
ACTAATGATGGAGATGTGAAAATAGTGGTTGGAAATAACTTTGATGAAAT
TGTCTTGGATGAGTCAAAGGATGTTCTTCTGGAGATCTATGCCCCTTGGT
GTGGGCATTGCCAAGCCTTCGAGCCAACCTACAACAAACTGGCCAAACAT
CTACGTGGCGTTGATTCTATTGTTATCGCTAAGATGGATGGCACGACAAA
TGAACATCACAGGGCAAAGTCTGATGGATTCCCAACAATTCTTTTCTTCC
CAGCTGGAAACAAGAGTTTTGATCCTATCAATGTAGATGTTGACCGTACT
GTGGTGGCATTGTACAAGTTTCTTAAGAAAAATGCTTCAATCCCCTTTAA
AATCCAGAAGCCAACATCAGCACCCAAGACGGAGAAACCAACTTCAGAAC
CAAAAGCTGAGTCCTCAGATATCAAAGAGAGCCACGAGAGCAGTAGCGAC
AAAGATGTGAA
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