CX290538

Overview
NameCX290538
Unique NameCX290538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig300 contig Ccv1_Contig300:1..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA1_BOVIN (Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.652e-29
Identity = 71/172 (41.28%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 527
            + E+FG+  E  P V   T  ++  K+  +  ELT +KI  F   FLEGK+KP   S  +P+  D   VK++VG NF+E+  DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KFL+
Sbjct:  303 ILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKFLE 473          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA1_RABIT (Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 72/172 (41.86%), Postives = 100/172 (58.14%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 527
            + E+FG+  E  P V   T  ++  K+  +  ELT + I  F + FLEGK+KP   S  +PE  D   VK++VG NF+E+  DE K+V +E YAPWCGHC+   P ++KL +  +    IVIAKMD T NE    K   FPT+ FFPAG      I+ + +RT+    KFL+
Sbjct:  302 ILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEGITEFCQRFLEGKIKPHLMSQELPEDWDRQPVKVLVGKNFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKEHQDIVIAKMDSTANEVEAVKVHSFPTLKFFPAG-PGRTVIDYNGERTLDGFKKFLE 472          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA1_HUMAN (Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.036e-28
Identity = 70/172 (40.70%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 527
            + E+FG+  E  P V   T  ++  K+  + E LT ++I  F   FLEGK+KP   S  +PE  D   VK++VG NF+++  DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KFL+
Sbjct:  301 ILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKFLE 471          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI2_DICDI (Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.036e-28
Identity = 68/182 (37.36%), Postives = 109/182 (59.89%), Query Frame = 3
Query:   30 YFGITGEAPKVLAYTGNDDAKKHILDGELTL--DKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD----GFPTILFFPAGNKSFDPINVDVDRT-VVALYKFLKKNASIPFKI 554
            + G++G+    ++     +  ++  D + T   D +  + +D + GKV PF KS P PE+ND  VK+ VG  F ++VLD  KDVL+E YAPWCGHC+   P Y+KL ++L+ V+S+ I K+D  +N+     SD    G+PTI+ F A +K  +PI+ +  R   +   +F++ NA+I FK+
Sbjct:  314 HMGLSGKVVPAISVDSVANKARYNFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSND---VPSDIEIRGYPTIMLFKADDKE-NPISYEGQRNDHMNFVEFIQDNAAIEFKL 491          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_ASPNG (Protein disulfide-isomerase OS=Aspergillus niger GN=pdiA PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.309e-28
Identity = 71/170 (41.76%), Postives = 103/170 (60.59%), Query Frame = 3
Query:   48 EAPKVLAYTGNDDAK--KHILDG--ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKL----AKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 533
            ++ K  A+   D AK  K+  D   EL  D+++ F +D L+GKV+P  KS+P+PE+ +G V +VV +++ ++V+D  KDVLLE YAPWCGHC+A  P Y++L    A H      + IAK+D T N+     + GFPT+  +PAG K   PI     RTV  L  F+K+N
Sbjct:  301 DSQKFPAFAIQDPAKNAKYPYDQAKELNADEVEKFIQDVLDGKVEPSIKSEPVPESQEGPVTVVVAHSYKDLVIDNDKDVLLEFYAPWCGHCKALAPKYDELAALYADHPDLAAKVTIAKIDATANDVPDPIT-GFPTLRLYPAGAKD-SPIEYSGSRTVEDLANFVKEN 468          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA1_PONAB (Protein disulfide-isomerase OS=Pongo abelii GN=P4HB PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.309e-28
Identity = 69/172 (40.12%), Postives = 102/172 (59.30%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 527
            + E+FG+  E  P V   T  ++  K+  + E LT ++I  F   FLEGK+KP   S  +P+  D   VK++VG NF+++  DE K+V +E YAPWCGHC+   P ++KL +  +  ++IVIAKMD T NE    K   FPT+ FFPA +     I+ + +RT+    KFL+
Sbjct:  301 ILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPDDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPA-SADRTVIDYNGERTLDGFKKFLE 471          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_ASPOR (Protein disulfide-isomerase OS=Aspergillus oryzae GN=pdiA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.143e-28
Identity = 67/163 (41.10%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  111 ELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSE 599
            E+    I  F +D L+ KV+P  KS+ IPET +G V +VV +++ ++VLD  KDVLLE YAPWCGHC+A  P Y +LA   + +  + IAK+D T N+   + + GFPTI  F AG K   P+  +  RTV  L  F+K+N     K+      PK E+ + +
Sbjct:  330 EVKAKDIGKFIQDVLDDKVEPSIKSEAIPETQEGPVTVVVAHSYKDLVLDNEKDVLLEFYAPWCGHCKALAPKYEELASLYKDIPEVTIAKIDATANDVPDSIT-GFPTIKLFAAGAKD-SPVEYEGSRTVEDLANFVKENGK--HKVDALEVDPKKEQESGD 488          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI1_ARATH (Probable protein disulfide-isomerase 1 OS=Arabidopsis thaliana GN=At1g21750 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.717e-28
Identity = 73/194 (37.63%), Postives = 110/194 (56.70%), Query Frame = 3
Query:   27 EYFGIT-GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSE 599
            +YFG+   + P ++  T +D   K  L   + +D+I+++ +DF +GK+ P  KS PIP  N+  VK+VV ++ D+IVL+  K+VLLE YAPWCGHCQ   P  +++A   +   S+VIAK+D T N+  +   D  GFPTI F  A   S + +  + DRT      F+ KN       +     PK E+ T+E
Sbjct:  315 QYFGLEESQVPLIIIQTADD---KKYLKTNVEVDQIESWVKDFKDGKIAPHKKSQPIPAENNEPVKVVVSDSLDDIVLNSGKNVLLEFYAPWCGHCQKLAPILDEVAVSYQSDSSVVIAKLDATANDFPKDTFDVKGFPTIYFKSA---SGNVVVYEGDRTKEDFISFVDKN-------KDTVGEPKKEEETTE 495          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: GSBP_CHICK (Dolichyl-diphosphooligosaccharide--protein glycotransferase OS=Gallus gallus PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 69/173 (39.88%), Postives = 105/173 (60.69%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKVKPFFKS-DPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLK 527
            + E+FG+  E  P V   T +++  K+  + E LT +K+  F   FLEGK+KP   S +P+PE  D   VK++VG N++E+  DE K+V +E YAPWCGHC+   P +++L +  +  ++IVIAKM+ T NE    K   FPT+ FFPA  +    I+ + +RT+    KFL+
Sbjct:  301 ILEFFGLKKEECPAVRLITLDEELTKYKPETEELTAEKLTQFCHHFLEGKIKPHLMSNEPLPEDWDKQPVKVLVGKNYEEVAFDEKKNVFIEFYAPWCGHCKQLAPMWDRLGEAYKDDENIVIAKMESTANEVEAIKVHSFPTLKFFPASAER-TVIDYNGERTLDGYKKFLE 472          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_MEDSA (Protein disulfide-isomerase OS=Medicago sativa GN=PDI PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.552e-27
Identity = 70/199 (35.18%), Postives = 111/199 (55.78%), Query Frame = 3
Query:   27 EYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN----ASIPFKIQKPTSA--PKTEKPTSE 599
            +YFG+  E   ++    ND  K       L LD++ T+ + + +GKV+PF KS+PIPETN+  VK+VVG   +++V    K+VL+E YAPWCGHC+   P  +++A   +    +VIAK+D T N+      D  G+PT+ F  A  K       D  RT   + +F++KN     +   ++++P +A  P+ E+P  E
Sbjct:  318 QYFGLKEEQVPLIIIQHNDGKK--FFKPNLELDQLPTWLKAYKDGKVEPFVKSEPIPETNNEPVKVVVGQTLEDVVFKSGKNVLIEFYAPWCGHCKQLAPILDEVAVSFQSDADVVIAKLDATANDIPTDTFDVQGYPTLYFRSASGKL---SQYDGGRTKEDIIEFIEKNKDKTGAAHQEVEQPKAAAQPEAEQPKDE 511          
The following BLAST results are available for this feature:
BLAST of CX290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PDIA1_BOVIN4.652e-2941.28Protein disulfide-isomerase OS=Bos taurus GN=P4HB ... [more]
PDIA1_RABIT6.075e-2941.86Protein disulfide-isomerase OS=Oryctolagus cunicul... [more]
PDIA1_HUMAN1.036e-2840.70Protein disulfide-isomerase OS=Homo sapiens GN=P4H... [more]
PDI2_DICDI1.036e-2837.36Protein disulfide-isomerase 2 OS=Dictyostelium dis... [more]
PDI_ASPNG2.309e-2841.76Protein disulfide-isomerase OS=Aspergillus niger G... [more]
PDIA1_PONAB2.309e-2840.12Protein disulfide-isomerase OS=Pongo abelii GN=P4H... [more]
PDI_ASPOR5.143e-2841.10Protein disulfide-isomerase OS=Aspergillus oryzae ... [more]
PDI1_ARATH6.717e-2837.63Probable protein disulfide-isomerase 1 OS=Arabidop... [more]
GSBP_CHICK8.773e-2839.88Dolichyl-diphosphooligosaccharide--protein glycotr... [more]
PDI_MEDSA2.552e-2735.18Protein disulfide-isomerase OS=Medicago sativa GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02025C08SK IF1 Citrus clementina cDNA clone C02025C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290538 ID=CX290538; Name=CX290538; organism=Citrus clementina; type=EST; length=661bp
ATGAAGATGTCGGAAAGCCTGTTTCAGAGTATTTTGGCATCACTGGGGAA
GCTCCCAAAGTTCTTGCATACACGGGGAATGATGACGCTAAAAAACATAT
CCTGGATGGAGAGTTGACCTTGGATAAAATTAAGACTTTTGGAGAGGATT
TCCTCGAAGGCAAGGTTAAGCCTTTCTTTAAGTCTGATCCAATTCCAGAA
ACTAATGATGGAGATGTGAAAATAGTGGTTGGAAATAACTTTGATGAAAT
TGTCTTGGATGAGTCAAAGGATGTTCTTCTGGAGATCTATGCCCCTTGGT
GTGGGCATTGCCAAGCCTTCGAGCCAACCTACAACAAACTGGCCAAACAT
CTACGTGGCGTTGATTCTATTGTTATCGCTAAGATGGATGGCACGACAAA
TGAACATCACAGGGCAAAGTCTGATGGATTCCCAACAATTCTTTTCTTCC
CAGCTGGAAACAAGAGTTTTGATCCTATCAATGTAGATGTTGACCGTACT
GTGGTGGCATTGTACAAGTTTCTTAAGAAAAATGCTTCAATCCCCTTTAA
AATCCAGAAGCCAACATCAGCACCCAAGACGGAGAAACCAACTTCAGAAC
CAAAAGCTGAGTCCTCAGATATCAAAGAGAGCCACGAGAGCAGTAGCGAC
AAAGATGTGAA
back to top