CX290538

Overview
NameCX290538
Unique NameCX290538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig300 contig Ccv1_Contig300:1..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_DROME (Protein disulfide-isomerase OS=Drosophila melanogaster GN=Pdi PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 71/198 (35.86%), Postives = 110/198 (55.56%), Query Frame = 3
Query:   21 VSEYFGITGE-APKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPK 605
            + E+FG+  E  P +      +D  K+  + + L+ + I+ F + FL+GK+K    S  +PE  D + VK++V +NF+ + LD+SK VL+E YAPWCGHC+   P Y++LA+  +  + IVIAKMD T NE    K   FPTI +F   +     I+ ++DRT+    KFL  N     ++       +TE+    PK
Sbjct:  301 IFEFFGMNKEEVPTIRLIKLEEDMAKYKPESDDLSAETIEAFLKKFLDGKLKQHLLSQELPEDWDKNPVKVLVSSNFESVALDKSKSVLVEFYAPWCGHCKQLAPIYDQLAEKYKDNEDIVIAKMDSTANELESIKISSFPTIKYFRKEDNKV--IDFNLDRTLDDFVKFLDANG----EVADSEPVEETEEEEEAPK 492          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI2_ARATH (Protein disulfide-isomerase 2 OS=Arabidopsis thaliana GN=At1g77510 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.814e-26
Identity = 73/196 (37.24%), Postives = 110/196 (56.12%), Query Frame = 3
Query:   27 EYFGIT-GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPK 605
            +YFG+   + P ++  T   D KK+ L   + +D+I+++ +DF +GKV    KS PIP  N+  VK+VV  + D+IV    K+VL+E YAPWCGHCQ   P  +++A   +   S++IAK+D T N+      D  GFPTI F  A   S + +  + DRT      F++KN+      +KPTS  +    + EPK
Sbjct:  313 QYFGLEESQVPLIIIQT--PDNKKY-LKVNVEVDQIESWFKDFQDGKVAVHKKSQPIPAENNEPVKVVVAESLDDIVFKSGKNVLIEFYAPWCGHCQKLAPILDEVALSFQNDPSVIIAKLDATANDIPSDTFDVKGFPTIYFRSA---SGNVVVYEGDRTKEDFINFVEKNSE-----KKPTSHGEESTKSEEPK 497          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_DATGL (Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.401e-25
Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 3
Query:   27 EYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKA 608
            +YFG+  +   ++    ND  K   L   L  D I ++ +++ + K+ P+ KS+PIPE N+  VK+VV ++ DEIV    K+VLLE YAPWCGHC+   P  +++A        ++IAK+D T N++     D  G+PT+ F  A   S + +  D  RT     +F++KN     K  K  S  K ++  SE KA
Sbjct:  318 QYFGLRDDQVPLIVIQNNDGTK--YLKPNLEPDHIASWVKEYKDCKLSPYRKSEPIPEHNNEPVKVVVADSLDEIVFKSGKNVLLEFYAPWCGHCKQLAPILDEVAVSFENDPDVLIAKLDATANDYPTNTFDVKGYPTLYFKSA---SGELLQYDGGRTKEDFIEFIEKNRE---KSSKKESIVKDDQTDSETKA 505          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_HORVU (Protein disulfide-isomerase OS=Hordeum vulgare GN=PDI PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25
Identity = 71/197 (36.04%), Postives = 112/197 (56.85%), Query Frame = 3
Query:   27 EYFGI-TGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKA 608
            +YFG+   +AP +L   G  D+KK + +  +   +I  + +D+ +GK+ PF KS+PIPE N+  VK+VV +N  ++V    K+VL+E YAPWCGHC+   P  ++ A  L+  + +VIAKMD T N+        G+PT+ F  P+G K    ++ +  RT   +  +++KN     K     +A  TEK  +EP A
Sbjct:  322 QYFGLKVDQAPLILIQDG--DSKKFLKE-HVEAGQIVAWLKDYFDGKLTPFRKSEPIPEANNEPVKVVVADNVHDVVFKSGKNVLIEFYAPWCGHCKKLAPILDEAAATLQSEEDVVIAKMDATENDVPGEFDVQGYPTLYFVTPSGKK----VSYEGGRTADEIVDYIRKN-----KETAGQAAAATEK-AAEPAA 505          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA2_HUMAN (Protein disulfide-isomerase A2 OS=Homo sapiens GN=PDIA2 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.075e-25
Identity = 68/199 (34.17%), Postives = 99/199 (49.75%), Query Frame = 3
Query:   21 VSEYFGITGEAPKVLAYTGNDDAKKH--ILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIP-ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKA 608
            V +YFG+  EA   L     +  KK+  +  G +T   I  F    L G+VKP+  S  IP + +   VK +VG NF+++  DE+K+V ++ YAPWC HC+   P +  LA+  +  + I+IA++D T NE       GFPT+ +FPAG      I     R +    KFL     +P           TE+P  EP A
Sbjct:  322 VLQYFGLKAEAAPTLRLVNLETTKKYAPVDGGPVTAASITAFCHAVLNGQVKPYLLSQEIPPDWDQRPVKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDIIIAELDATANELDAFAVHGFPTLKYFPAG-PGRKVIEYKSTRDLETFSKFLDNGGVLP-----------TEEPPEEPAA 508          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA2_PONAB (Protein disulfide-isomerase A2 OS=Pongo abelii GN=PDIA2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.078e-25
Identity = 66/199 (33.17%), Postives = 99/199 (49.75%), Query Frame = 3
Query:   21 VSEYFGITGEAPKVLAYTGNDDAKKH--ILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIP-ETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEPKA 608
            V +YFG+  EA   L     +  KK+  +  G +T   I  F    L G+VKP+  S  +P + +   VK +VG NF+++  DE+K+V ++ YAPWC HC+   P +  LA+  +  + ++IA++D T NE       GFPT+ +FPAG      I     R +    KFL     +P           TE+P  EP A
Sbjct:  322 VLQYFGLKAEAAPTLRLVNLETTKKYAPVDGGPVTTASITAFCHAVLNGQVKPYLLSQEVPPDWDQRPVKTLVGKNFEQVAFDETKNVFVKFYAPWCTHCKEMAPAWEALAEKYQDHEDVIIAELDATANELDAFAVHGFPTLKYFPAG-PGRKVIEYKSTRDLGTFSKFLDNGGVLP-----------TEEPLEEPAA 508          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_WHEAT (Protein disulfide-isomerase OS=Triticum aestivum GN=PDI PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.186e-24
Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 3
Query:   48 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAPKTEKPTSEP 602
            +AP +L     D   K  L  ++   +I  + +D+ +GK+ PF KS+PIPE N+  VK+VV +N  ++V   +K+VL+E YAPWCGHC+   P  ++ A  L+  + +VIAK+D T N+        G+PT+ F  P+G K    ++ +  RT   +  ++KKN     +     +    E   +EP
Sbjct:  331 QAPLILI---QDSDSKKFLKEQVEAGQIVAWLKDYFDGKLTPFRKSEPIPEANNEPVKVVVADNIHDVVFKSAKNVLIEFYAPWCGHCKKLAPILDEAAATLQSEEDVVIAKIDATANDVPGEFDVQGYPTLYFVTPSGKK----VSYEGGRTADEIVDYIKKNKETAGQAAAAATEKAAEPAATEP 510          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_RICCO (Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.004e-23
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   27 EYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 533
            +YFG+  +   ++    ND  K   L   L  D I  + + + EGKV+ + KS+PIPE N+  VK+VV +   +IV +  K+VLLE YAPWCGHC+   P  +++A   +    IVIAK+D T N+      D  G+PT+ F  A  K       D DRT   +  F++KN
Sbjct:  317 QYFGLKEDQVPLIIIQTNDGQK--YLKANLEPDHIAPWVKAYKEGKVQAYRKSEPIPEVNNEPVKVVVADTLQDIVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSYKSDADIVIAKLDATANDIPSDTFDVRGYPTVYFRSASGK---VEQYDGDRTKDDIISFIEKN 482          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_YEAST (Protein disulfide-isomerase OS=Saccharomyces cerevisiae GN=PDI1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 56/136 (41.18%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  129 IKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 533
            I++  +DFL+G   P  KS  I E  D  V  +VG N DEIV D  KDVL+  YAPWCGHC+   PTY +LA  +      ++IAK+D T N+      +G+PTI+ +P G KS + +     R++ +L+ F+K+N
Sbjct:  349 IESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKEN 483          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_MAIZE (Protein disulfide-isomerase OS=Zea mays GN=PDI PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.311e-23
Identity = 66/185 (35.68%), Postives = 100/185 (54.05%), Query Frame = 3
Query:   27 EYFGIT-GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAP 575
            +YFG+   + P +L   G  D+KK  L   +  D+I  + +++ +GK+ PF  S+PIPE N+  VK+VV +N  + V    K+VL+E YAPWCGHC+   P  ++ A  L+  + +VIAKMD T N+        G+PT+ F     K     + D  RT   +  F+KK+        K T+AP
Sbjct:  319 QYFGLKEDQTPLILIQDG--DSKK-FLKVHVEADQIVAWLKEYFDGKLTPFRNSEPIPEVNNEPVKVVVADNVHDFVFKSGKNVLIEFYAPWCGHCKKLAPILDEAATTLQSDEEVVIAKMDATANDVPSEFDVQGYPTLYFVTPSGK---VTSYDSGRTADDIVDFIKKS--------KETAAP 489          
The following BLAST results are available for this feature:
BLAST of CX290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PDI_DROME5.686e-2735.86Protein disulfide-isomerase OS=Drosophila melanoga... [more]
PDI2_ARATH4.814e-2637.24Protein disulfide-isomerase 2 OS=Arabidopsis thali... [more]
PDI_DATGL1.401e-2535.20Protein disulfide-isomerase OS=Datisca glomerata G... [more]
PDI_HORVU2.389e-2536.04Protein disulfide-isomerase OS=Hordeum vulgare GN=... [more]
PDIA2_HUMAN4.075e-2534.17Protein disulfide-isomerase A2 OS=Homo sapiens GN=... [more]
PDIA2_PONAB9.078e-2533.17Protein disulfide-isomerase A2 OS=Pongo abelii GN=... [more]
PDI_WHEAT1.186e-2433.16Protein disulfide-isomerase OS=Triticum aestivum G... [more]
PDI_RICCO1.004e-2337.43Protein disulfide-isomerase OS=Ricinus communis PE... [more]
PDI_YEAST1.311e-2341.18Protein disulfide-isomerase OS=Saccharomyces cerev... [more]
PDI_MAIZE1.311e-2335.68Protein disulfide-isomerase OS=Zea mays GN=PDI PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02025C08SK IF1 Citrus clementina cDNA clone C02025C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290538 ID=CX290538; Name=CX290538; organism=Citrus clementina; type=EST; length=661bp
ATGAAGATGTCGGAAAGCCTGTTTCAGAGTATTTTGGCATCACTGGGGAA
GCTCCCAAAGTTCTTGCATACACGGGGAATGATGACGCTAAAAAACATAT
CCTGGATGGAGAGTTGACCTTGGATAAAATTAAGACTTTTGGAGAGGATT
TCCTCGAAGGCAAGGTTAAGCCTTTCTTTAAGTCTGATCCAATTCCAGAA
ACTAATGATGGAGATGTGAAAATAGTGGTTGGAAATAACTTTGATGAAAT
TGTCTTGGATGAGTCAAAGGATGTTCTTCTGGAGATCTATGCCCCTTGGT
GTGGGCATTGCCAAGCCTTCGAGCCAACCTACAACAAACTGGCCAAACAT
CTACGTGGCGTTGATTCTATTGTTATCGCTAAGATGGATGGCACGACAAA
TGAACATCACAGGGCAAAGTCTGATGGATTCCCAACAATTCTTTTCTTCC
CAGCTGGAAACAAGAGTTTTGATCCTATCAATGTAGATGTTGACCGTACT
GTGGTGGCATTGTACAAGTTTCTTAAGAAAAATGCTTCAATCCCCTTTAA
AATCCAGAAGCCAACATCAGCACCCAAGACGGAGAAACCAACTTCAGAAC
CAAAAGCTGAGTCCTCAGATATCAAAGAGAGCCACGAGAGCAGTAGCGAC
AAAGATGTGAA
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