CX290538

Overview
NameCX290538
Unique NameCX290538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI1_CAEEL (Protein disulfide-isomerase 1 OS=Caenorhabditis elegans GN=pdi-1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.506e-23
Identity = 54/139 (38.85%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  123 DKIKTFGEDFLEGKVKPFFKSDPIPET-NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 536
            +  + F   +LEGK     K+  +PE  N   VK++V +NF+EI LDE+K V ++ YAPWCGHC+   P +++LA+      ++VIAK+D T NE    K + FPT+  +PAG+ +  P++ D DR +    +F+ K A
Sbjct:  333 EDFEAFTNSYLEGKSAQDLKAQDLPEDWNALPVKVLVASNFNEIALDETKTVFVKFYAPWCGHCKQLVPVWDELAEKYESNPNVVIAKLDATLNELADVKVNSFPTLKLWPAGSST--PVDYDGDRNLEKFEEFVNKYA 469          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: ERP60_SCHMA (Probable protein disulfide-isomerase ER-60 OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 65/180 (36.11%), Postives = 99/180 (55.00%), Query Frame = 3
Query:    3 EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 539
            +D    +S+Y GI  EA K+ A       KK+ L+ + +LD    F   F +G + P  KS+P+P  +   VK +V  NFDEIV +E KDV++  +A WCGHC+   P Y + A  ++   ++V+A MD T N+     +  GFPTI F P G KS  P++ +  R    + K+L + A+
Sbjct:  293 DDFSYEISDY-GI--EADKLPAVVIQSKDKKYKLE-KFSLDAFSDFLNKFEDGLLTPHVKSEPLPTDDSSAVKKLVALNFDEIVNNEEKDVMVVFHAGWCGHCKNLMPKYEEAASKVKNEPNLVLAAMDATANDVPSPYQVRGFPTIYFVPKGKKS-SPVSYEGGRDTNDIIKYLAREAT 467          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI_ALTAL (Protein disulfide-isomerase (Fragment) OS=Alternaria alternata PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  105 DGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDS----IVIAKMDGTTNEHHRAKSDGFPTILF 446
            + ++T  +I  F +DFL GK+ P  KS+PIPE+NDG V +VV +N+ ++V+D  KDVL+E YAPWCGHC+A  P Y +L + L   D     + IAK+D T N+         P+ LF
Sbjct:  201 EAKITEKEIGKFVDDFLAGKIDPSIKSEPIPESNDGPVTVVVAHNYKDVVIDNDKDVLVEFYAPWCGHCKALAPKYEELGQ-LYASDELSKLVTIAKVDATLNDVPDEIQGFLPSSLF 317          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: BS2_TRYBB (Bloodstream-specific protein 2 OS=Trypanosoma brucei brucei GN=BS2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 54/168 (32.14%), Postives = 95/168 (56.55%), Query Frame = 3
Query:  114 LTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA--KSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI-QKPTSAPKTEKPTSEPKA 608
            +T + ++ F  +F  G+V+P  KS P+PE    D K  +     +  L   KD+L+  +APWCGHC+ F PT++K+AK     D +++A++D T N  + +      FPT+ F P G K   P+  + +R+   +Y+F++K+ +  FK+ +KP +  + +K   E K+
Sbjct:  316 VTRESLEKFILEFAAGRVEPTIKSLPVPEVETVDGKTTIVAKTMQKHLTSGKDMLILFFAPWCGHCKNFAPTFDKIAKEFDATD-LIVAELDATANYVNSSTFTVTAFPTVFFVPNGGK---PVVFEGERSFENVYEFVRKHVT-TFKVSEKPANVTEEKKSEEENKS 478          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: EUG1_YEAST (Protein disulfide-isomerase EUG1 OS=Saccharomyces cerevisiae GN=EUG1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.699e-19
Identity = 53/146 (36.30%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  114 LTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG----VDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 539
            L  D I    +D+ EG  KP  KS+ IP+    +V  +VG   D+IV D+ KDVL++ YA WC H + F P Y ++A  L       D I+IA++D   N+       G+PTI  +PAGN S  PI  +  R +  +++F+K++ +
Sbjct:  343 LDRDMIVQLVKDYREGTAKPIVKSEEIPKEQKSNVYKIVGKTHDDIVHDDDKDVLVKYYATWCIHSKRFAPIYEEIANVLASDESVRDKILIAEVDSGANDILSFPVTGYPTIALYPAGNNS-KPIIFNKIRNLEDVFEFIKESGT 487          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  213 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD-----GFPTILFFPAGNKS 467
            +V ++  +NFDEIVLD++KDVL+E YAPWCGHC++  PTY K+A   +  + +VIA +D    + H+A  +     GFPT+ FFP  NK+
Sbjct:  142 NVVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVATVFKQEEGVVIANLDA---DAHKALGEKYGVSGFPTLKFFPKDNKA 228          

HSP 2 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  213 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK--SDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI 554
            DV ++  ++F++ V  + K  L+E YAPWCGHC+   P Y KL    +   S++IAK+D    +    K    G+PTI +FP G  S +P   +  R   AL +++ K      K+
Sbjct:   24 DVVVLTDDSFEKEV-GKDKGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEQKSVCTKYGVSGYPTIQWFPKG--SLEPQKYEGPRNAEALAEYVNKEGGTNVKL 136          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.099e-17
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  201 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSD--GFPTILFFPAGNKS 467
            T    V ++    F+E+VLD +KDVL+E YAPWCGHC++  P Y K+A   +  D +VIA +D         K D  GFPT+ FFP GNK+
Sbjct:  144 TAPSHVVVLTPETFNEVVLDGTKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDVVIANLDADKYRDLAEKYDVSGFPTLKFFPKGNKA 234          

HSP 2 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = 3
Query:  213 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKS----DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI 554
            DV ++   NF++ V    K  L+E YAPWCGHC+   P Y KL    +   S++IAK+D   +EH    S     G+PTI +FP G  S +P   +  RT  +L +F+        KI
Sbjct:   30 DVVVLTEENFEKEV-GHDKGALVEFYAPWCGHCKKLAPEYEKLPNSFKKAKSVLIAKVD--CDEHKSVCSKYGVSGYPTIQWFPKG--SLEPKKFEGPRTAESLAEFVNTEGGTNVKI 142          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDILT_MACFA (Protein disulfide-isomerase-like protein of the testis OS=Macaca fascicularis GN=PDILT PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 51/156 (32.69%), Postives = 79/156 (50.64%), Query Frame = 3
Query:    3 EDVGKPVSEYFGITG-EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNK 464
            E   + V EYF +T  + P V     + DA+  +   ++T + +K FG  FL    K    S+ IP+  D G VK +VG NF+ +V D+ KDV +  YAPW   C+   P   +L +  +   +I+IAK+D T N+      D +P    FP  ++
Sbjct:  316 EPRNRRVIEYFRVTEVDIPSVQILNLSSDARYKMPSDDITYENLKKFGRSFLSKNAKKHQSSEEIPKHWDQGLVKQLVGKNFNIVVFDKEKDVFVMFYAPWSKKCKMLFPLLEELGRKYQNHSTIIIAKIDITANDIQLVYLDRYPFFRLFPTDSQ 471          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDILT_HUMAN (Protein disulfide-isomerase-like protein of the testis OS=Homo sapiens GN=PDILT PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 49/150 (32.67%), Postives = 78/150 (52.00%), Query Frame = 3
Query:   21 VSEYFGITG-EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNK 464
            V +YF +T  + P V     + DA+  +   ++T + +K FG  FL         S+ IP+  D G VK +VG NF+ +V D+ KDV +  YAPW   C+   P   +L +  +   +I+IAK+D T N+      D +P    FP+G++
Sbjct:  322 VFKYFRVTEVDIPSVQILNLSSDARYKMPSDDITYESLKKFGRSFLSKNATKHQSSEEIPKYWDQGLVKQLVGKNFNVVVFDKEKDVFVMFYAPWSKKCKMLFPLLEELGRKYQNHSTIIIAKIDVTANDIQLMYLDRYPFFRLFPSGSQ 471          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDILT_MOUSE (Protein disulfide-isomerase-like protein of the testis OS=Mus musculus GN=Pdilt PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 51/182 (28.02%), Postives = 86/182 (47.25%), Query Frame = 3
Query:    3 EDVGKPVSEYFGITG-EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 542
            E   K + EYF I+    P V     + D +  +   ++  + +K F   FL    K    S+ IP+  D G VK +VG NF+ +VLD+ KDV +  YAPW   C+   P   +L    +   +++IAK+D T N+   A  + +P    FP  ++  + +    + T+     FL+ +  +
Sbjct:  313 EPKNKRIFEYFQISRVNVPSVQILNLSSDGRYKMPTDDINFESLKKFCNSFLSKTAKKHKASEEIPKYWDQGPVKKLVGKNFNVVVLDKEKDVFVMFYAPWSEKCRVLLPLLEELGIKYQNHSTVIIAKIDITANDIQLANPEQYPFFRLFPTDSQ--EAVMYKGEHTMKGFCDFLESHVKV 492          
The following BLAST results are available for this feature:
BLAST of CX290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PDI1_CAEEL6.506e-2338.85Protein disulfide-isomerase 1 OS=Caenorhabditis el... [more]
ERP60_SCHMA1.893e-2236.11Probable protein disulfide-isomerase ER-60 OS=Schi... [more]
PDI_ALTAL2.472e-2244.07Protein disulfide-isomerase (Fragment) OS=Alternar... [more]
BS2_TRYBB6.733e-2032.14Bloodstream-specific protein 2 OS=Trypanosoma bruc... [more]
EUG1_YEAST5.699e-1936.30Protein disulfide-isomerase EUG1 OS=Saccharomyces ... [more]
PDIA6_ARATH1.075e-1746.67Probable protein disulfide-isomerase A6 OS=Arabido... [more]
PDIA6_MEDSA9.099e-1745.05Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDILT_MACFA1.188e-1632.69Protein disulfide-isomerase-like protein of the te... [more]
PDILT_HUMAN2.027e-1632.67Protein disulfide-isomerase-like protein of the te... [more]
PDILT_MOUSE3.823e-1528.02Protein disulfide-isomerase-like protein of the te... [more]

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Properties
Property NameValue
Genbank descriptionC02025C08SK IF1 Citrus clementina cDNA clone C02025C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290538 ID=CX290538; Name=CX290538; organism=Citrus clementina; type=EST; length=661bp
ATGAAGATGTCGGAAAGCCTGTTTCAGAGTATTTTGGCATCACTGGGGAA
GCTCCCAAAGTTCTTGCATACACGGGGAATGATGACGCTAAAAAACATAT
CCTGGATGGAGAGTTGACCTTGGATAAAATTAAGACTTTTGGAGAGGATT
TCCTCGAAGGCAAGGTTAAGCCTTTCTTTAAGTCTGATCCAATTCCAGAA
ACTAATGATGGAGATGTGAAAATAGTGGTTGGAAATAACTTTGATGAAAT
TGTCTTGGATGAGTCAAAGGATGTTCTTCTGGAGATCTATGCCCCTTGGT
GTGGGCATTGCCAAGCCTTCGAGCCAACCTACAACAAACTGGCCAAACAT
CTACGTGGCGTTGATTCTATTGTTATCGCTAAGATGGATGGCACGACAAA
TGAACATCACAGGGCAAAGTCTGATGGATTCCCAACAATTCTTTTCTTCC
CAGCTGGAAACAAGAGTTTTGATCCTATCAATGTAGATGTTGACCGTACT
GTGGTGGCATTGTACAAGTTTCTTAAGAAAAATGCTTCAATCCCCTTTAA
AATCCAGAAGCCAACATCAGCACCCAAGACGGAGAAACCAACTTCAGAAC
CAAAAGCTGAGTCCTCAGATATCAAAGAGAGCCACGAGAGCAGTAGCGAC
AAAGATGTGAA
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