CX290538

Overview
NameCX290538
Unique NameCX290538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig300 contig Ccv1_Contig300:1..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDILT_RAT (Protein disulfide-isomerase-like protein of the testis OS=Rattus norvegicus GN=Pdilt PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.993e-15
Identity = 51/182 (28.02%), Postives = 86/182 (47.25%), Query Frame = 3
Query:    3 EDVGKPVSEYFGITG-EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKVKPFFKSDPIPETNDGD-VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 542
            E   K + EYF I+    P V     + DA+  +    +T + +K F   FL    K    S+ IP+  D + VK +VG NF+ +V D+ KDV +  YAPW   C+   P   +L    +   +++IAK+D T N+   A  + +P    FP  ++  + +    + T+     FL+ +  +
Sbjct:  313 EPKNKRIFEYFQISRVNVPSVQILNLSSDARYKMPTDNITFESLKKFCNSFLSRTAKKHKSSEEIPKYWDQEPVKKLVGKNFNVVVFDKEKDVFVMFYAPWSEKCRVLLPLLEELGIKYQNHSTVIIAKIDITANDIQLANPEQYPFFRLFPTDSQ--EAVMYKGEHTMKGFCDFLESHVKV 492          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 3
Query:  225 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR-GVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKIQKPTSAP 575
            ++ +NFD++VL   K  L+E +APWCGHC+   P Y +LA  L    D + IAK+D         R    GFPT+ FF    KS  P++    R + +L  F+ +   +  K +K  SAP
Sbjct:   25 LIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAERALGKRFGVQGFPTLKFF--DGKSEQPVDYKGGRDLDSLSNFIAEKTGV--KARKKGSAP 140          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI2_SCHPO (Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe GN=SPAC17H9.14c PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  237 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----NEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 536
            NFD++V+D+ KDVL+E YA WCG+C+   PTY  L K  +   ++ I K++          H   S  FPTI FFP  +K   P   + DR++ +L +++ K +
Sbjct:  149 NFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVAS--FPTIKFFPKDDKD-KPELYEGDRSLESLIEYINKKS 249          
BLAST of CX290538 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  234 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKS----DGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 542
            +NFD +VLD+SK+VL+E YAPWCGHC+   P Y  L         +VIAK+D    ++    S     GFPT+ +F  G +S D    +  R +     ++ K A +
Sbjct:  150 SNFDSVVLDKSKNVLVEFYAPWCGHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWF--GKQSKDGEKYEQGRDLDTFINYINKQAGV 254          
The following BLAST results are available for this feature:
BLAST of CX290538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PDILT_RAT4.993e-1528.02Protein disulfide-isomerase-like protein of the te... [more]
ERP38_NEUCR1.041e-1235.83Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]
PDI2_SCHPO1.360e-1236.54Protein disulfide-isomerase C17H9.14c OS=Schizosac... [more]
PDI1_DICDI2.319e-1236.45Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]

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Properties
Property NameValue
Genbank descriptionC02025C08SK IF1 Citrus clementina cDNA clone C02025C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290538 ID=CX290538; Name=CX290538; organism=Citrus clementina; type=EST; length=661bp
ATGAAGATGTCGGAAAGCCTGTTTCAGAGTATTTTGGCATCACTGGGGAA
GCTCCCAAAGTTCTTGCATACACGGGGAATGATGACGCTAAAAAACATAT
CCTGGATGGAGAGTTGACCTTGGATAAAATTAAGACTTTTGGAGAGGATT
TCCTCGAAGGCAAGGTTAAGCCTTTCTTTAAGTCTGATCCAATTCCAGAA
ACTAATGATGGAGATGTGAAAATAGTGGTTGGAAATAACTTTGATGAAAT
TGTCTTGGATGAGTCAAAGGATGTTCTTCTGGAGATCTATGCCCCTTGGT
GTGGGCATTGCCAAGCCTTCGAGCCAACCTACAACAAACTGGCCAAACAT
CTACGTGGCGTTGATTCTATTGTTATCGCTAAGATGGATGGCACGACAAA
TGAACATCACAGGGCAAAGTCTGATGGATTCCCAACAATTCTTTTCTTCC
CAGCTGGAAACAAGAGTTTTGATCCTATCAATGTAGATGTTGACCGTACT
GTGGTGGCATTGTACAAGTTTCTTAAGAAAAATGCTTCAATCCCCTTTAA
AATCCAGAAGCCAACATCAGCACCCAAGACGGAGAAACCAACTTCAGAAC
CAAAAGCTGAGTCCTCAGATATCAAAGAGAGCCACGAGAGCAGTAGCGAC
AAAGATGTGAA
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