CX290540

Overview
NameCX290540
Unique NameCX290540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_PROMP (Phosphoglycerate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pgk PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.695e-57
Identity = 115/197 (58.38%), Postives = 147/197 (74.62%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            +K S+S L ++ L+GK+V VRVD NVPL+D+  ITDD R+RAA+PTIKYL+ + AKVIL++H GRPKG V  K  L P+  RLS++L  +V +   CIGEE       +  G VLLLENVRF++EEEKND +FAK LAS AD+YVNDAFG+AHRAHAST+GV KFL+P+VAGFL+ KEL YL  A+  PK  L  ++
Sbjct:    2 SKLSLSSLDKSKLEGKKVLVRVDFNVPLNDSGQITDDTRIRAAIPTIKYLINNSAKVILAAHFGRPKGKVNEKMRLTPVAARLSDILEQKVNLTESCIGEEALAKSNSLNNGEVLLLENVRFYEEEEKNDLDFAKNLASHADMYVNDAFGAAHRAHASTQGVTKFLEPAVAGFLLEKELKYLQGAIDAPKRPLAAIV 198          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_SYNP6 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 2.782e-57
Identity = 116/197 (58.88%), Postives = 138/197 (70.05%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            +K++++ L  ADL+GKRV VRVD NVPLD N  ITDD R+RAA+PTI+YL   GAKVIL SH GRPKG       L P+  RLSELLG  V    D +G   E  VA    G V+LLENVRFH EEE ND EFAK LASLAD+YVNDAFG+AHRAHA T GV ++L P VAG+L+ KEL YL  A+ NP+  L  ++
Sbjct:    2 SKRTLASLTAADLEGKRVLVRVDFNVPLDGNGKITDDTRIRAALPTIRYLSESGAKVILVSHFGRPKGKPVESMRLTPVAERLSELLGRPVVKTTDAVGAGAEAQVAATSNGQVVLLENVRFHAEEEANDAEFAKALASLADIYVNDAFGAAHRAHAPTAGVTEYLSPCVAGYLLEKELQYLQAAIDNPQRPLAAIV 198          

HSP 2 Score: 22.3274 bits (46), Expect = 2.782e-57
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            Q P AAIVGGS+
Sbjct:  191 QRPLAAIVGGSK 202          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_PROM0 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=pgk PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.891e-57
Identity = 116/197 (58.88%), Postives = 143/197 (72.59%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            +K S+S L +  L+GK+V VRVD NVPL+++  ITDD R+RAA+PTI+YL+ H AKVIL++H GRPKG V  K  L P+  RLSELLG  V + N CIG+E       +    VLLLENVRF  EEEKND EFA+KLAS AD+YVNDAFG+AHRAHAST+GV  +L PSVAGFL+ KEL YL  AV +P   L  ++
Sbjct:    2 SKLSLSSLDKTHLEGKKVLVRVDFNVPLNEDGQITDDTRIRAAIPTIEYLVNHSAKVILAAHFGRPKGQVNEKMRLTPVAARLSELLGQSVALTNSCIGDEAVAKSNSLSNRDVLLLENVRFFGEEEKNDLEFAQKLASHADMYVNDAFGAAHRAHASTQGVTNYLSPSVAGFLLEKELKYLQGAVDSPNRPLAAIV 198          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_ACIBL (Phosphoglycerate kinase OS=Acidobacteria bacterium (strain Ellin345) GN=pgk PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.775e-57
Identity = 113/196 (57.65%), Postives = 140/196 (71.43%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELL------GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            +K+  L  KRVF+RVD NVPLD+N  +TDD R+R  +PTI+Y + HGAK+IL SHLGRPKG   PK SLKP+  RL  +L      G  V  + DCIG + ++M  ++ +G  LLLENVRFH EEEKNDP FAK+LASL +LYVNDAFGSAHRAHASTEG+  +++ S AG LM KELDYL  A SNP    + +L
Sbjct:    6 IKDLQLSNKRVFMRVDFNVPLDENGRVTDDTRIRETLPTIEYALRHGAKLILCSHLGRPKGKPNPKMSLKPVAERLRVMLDHAISPGQNVGFSPDCIGMQAQEMAKQLEKGQALLLENVRFHAEEEKNDPAFAKELASLCELYVNDAFGSAHRAHASTEGITHYVEKSAAGLLMQKELDYLGKATSNPAKPFVAIL 201          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_PROM4 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=pgk PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.447e-56
Identity = 114/197 (57.87%), Postives = 144/197 (73.10%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            AK+S+S L   +L GKRVFVRVD NVP++   +ITDD R+RAA+PTIK L+  GA+VILS+H GRPKG V     L P+  RLSELLG  V   + CIG + +     +  G V+LLENVRF + EEKNDP+FAK+L+ LA++YVNDAFG+AHRAHASTEGV KFL P+VAG+LM KEL YL  A+ +PK  L  ++
Sbjct:    2 AKRSLSSLSAEELCGKRVFVRVDFNVPVNAEGDITDDTRIRAALPTIKDLIDKGARVILSAHFGRPKGQVNDAMRLTPVAQRLSELLGHTVIKTDSCIGSDAQAKAQSLNNGDVMLLENVRFIQGEEKNDPDFAKELSELAEVYVNDAFGAAHRAHASTEGVTKFLSPNVAGYLMEKELQYLQGAIDSPKRPLAAIV 198          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_BACP2 (Phosphoglycerate kinase OS=Bacillus pumilus (strain SAFR-032) GN=pgk PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.174e-56
Identity = 114/188 (60.64%), Postives = 145/188 (77.13%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNP 645
            KKSV   K+ D+KGK VF RVD NVP+ D   +TDD R+RAA+PTI+YL G GAKV+L+SHLGRPKG VT +  L P+  RL ELLG EVK A++  G+ V+K ++++ +G VL+LENVRF+  EEKNDPE +K  A LAD+YVNDAFG+AHRAHAST G+A +L P+V+GFLM KEL+ L  A+SNP
Sbjct:    3 KKSV---KDIDVKGKVVFCRVDFNVPMKDG-KVTDDTRIRAALPTIEYLTGQGAKVLLASHLGRPKGQVTEELRLTPVAKRLQELLGQEVKKADEAYGDNVKKQISDLKDGDVLVLENVRFYPGEEKNDPELSKAFADLADVYVNDAFGAAHRAHASTAGIAAYL-PAVSGFLMQKELEVLGKAISNP 185          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_THEP1 (Phosphoglycerate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pgk PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.452e-56
Identity = 117/194 (60.31%), Postives = 144/194 (74.23%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLLVVQG 681
            +K+ DLKGKRV +RVD NVP+ D + + DD R+RAA+PTIKY +  GAKVIL SHLGRPKG  +P++SL P+  RLSELLG EVK     +G+EV+K V E+ EG VLLLEN RFH  E KNDPE AK  ASLAD++VNDAFG+AHRAHAS  G+A+F+ PSVAGFLM KE+ +L     NP+    P +VV G
Sbjct:    6 IKDVDLKGKRVIMRVDFNVPVKDGV-VQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFI-PSVAGFLMEKEIKFLSKVTYNPEK---PYVVVLG 194          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_ANADF (Phosphoglycerate kinase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=pgk PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.299e-56
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = 1
Query:   91 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP---KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            ++  +   DL GKRVF+RVD NVPLD+   +TDD R+RAA+PTIK+ +   AKVIL SHLGRPKG      K+SL+P   RLSELL  +V +A+DCIG+ V+K+V ++ EG VLLLEN+RFH +EEKND  FA++LA+L D++VNDAFG+AHRAHAST G+A F+K   AGFL+ KE++YL  A+ +P+   + L+
Sbjct:    2 ALKTIDALDLAGKRVFIRVDFNVPLDEQRRVTDDARIRAALPTIKHAIQARAKVILGSHLGRPKGKPDDREKFSLEPAAQRLSELLKQDVILADDCIGDGVKKLVRDLKEGQVLLLENLRFHPQEEKNDEGFARELATLCDVWVNDAFGTAHRAHASTAGMAAFVKEKAAGFLIQKEVEYLGKALGSPERPFVALI 197          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_SYNJA (Phosphoglycerate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pgk PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 9.588e-56
Identity = 114/195 (58.46%), Postives = 138/195 (70.77%), Query Frame = 1
Query:  115 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP----------KGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            DLKGKRV VR D NVPLD   NITDD R+RA++PTI+ L   GAKVIL+SHLGRP          +      SL P+  RL++LLG  V  A DCIG E E +V+ +  G V LLENVRFH EEE NDPEFA+KLASLADL+VNDAFGSAHRAHAST GV  +L+P+VAG+L+ KEL +L  A+ NP+  L  ++
Sbjct:   15 DLKGKRVLVRADFNVPLDPQGNITDDTRIRASLPTIQALAQAGAKVILTSHLGRPIQKDKATGAIQIAREGNSLAPVAVRLAQLLGQPVAFAPDCIGPEAEAVVSSLENGQVALLENVRFHPEEEANDPEFARKLASLADLFVNDAFGSAHRAHASTAGVTAYLQPAVAGYLVEKELQFLSGAIENPQRPLAAII 209          

HSP 2 Score: 22.3274 bits (46), Expect = 9.588e-56
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  677 KVSTKIGVIDHFWRK 721
            KVSTKIGVI+    K
Sbjct:  213 KVSTKIGVIERLLEK 227          

HSP 3 Score: 21.9422 bits (45), Expect = 9.588e-56
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            Q P AAI+GGS+
Sbjct:  202 QRPLAAIIGGSK 213          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_SOLUE (Phosphoglycerate kinase OS=Solibacter usitatus (strain Ellin6076) GN=pgk PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.215e-55
Identity = 112/194 (57.73%), Postives = 143/194 (73.71%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDN----LNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            +++ DLKGKRVF+RVD NVPL  N    + IT D R++A++PTI+Y + HGA VIL+SHLGRPKG    + SLKP+  RL ++L V VKMA DC+G EV+ M+     G VLLLEN+RFH EEEKNDP FA +LA+L ++YVNDAFGSAHRAHASTEG+ K +K + AG LM KEL YL +A +NP    + +L
Sbjct:    6 IRDLDLKGKRVFIRVDFNVPLQKNDQGAMEITSDKRIKASLPTIQYALEHGAAVILASHLGRPKGKPNTEMSLKPVAARLEQVLKVPVKMAPDCVGPEVQAMLPA--PGEVLLLENLRFHAEEEKNDPAFAAQLAALCEIYVNDAFGSAHRAHASTEGMVKLVKQAAAGLLMEKELKYLGMATTNPPRPCVAIL 197          
The following BLAST results are available for this feature:
BLAST of CX290540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PROMP1.695e-5758.38Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_SYNP62.782e-5758.88Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROM02.891e-5758.88Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_ACIBL3.775e-5757.65Phosphoglycerate kinase OS=Acidobacteria bacterium... [more]
PGK_PROM42.447e-5657.87Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_BACP24.174e-5660.64Phosphoglycerate kinase OS=Bacillus pumilus (strai... [more]
PGK_THEP15.452e-5660.31Phosphoglycerate kinase OS=Thermotoga petrophila (... [more]
PGK_ANADF9.299e-5655.61Phosphoglycerate kinase OS=Anaeromyxobacter sp. (s... [more]
PGK_SYNJA9.588e-5658.46Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SOLUE1.215e-5557.73Phosphoglycerate kinase OS=Solibacter usitatus (st... [more]

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Properties
Property NameValue
Genbank descriptionC02025C10SK IF1 Citrus clementina cDNA clone C02025C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290540 ID=CX290540; Name=CX290540; organism=Citrus clementina; type=EST; length=733bp
TTCGGCCGAGGTCTCATTCCAAATCTACCAAAACCCTTTCTCGATTTCTC
TGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAAGCG
TTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTGGAT
CTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAGAGT
CCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCAAAG
TCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAGTAC
AGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGAGGT
TAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGGCTG
AAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCATAAG
GAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCTTGC
AGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATGCTT
CCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTCCTT
ATGNCAAAGGAACTAGATTATCTTGTTGTAGCTGTTTCAAATCCCAAGAA
CCATTTGCTGCCATTGTTGGTGGTTCAAGGTGTCAACTAAGATCGGTGTT
ATTGATCACTTTTGGAGAAAGTGACATTCTATT
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