CX290540

Overview
NameCX290540
Unique NameCX290540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_PROM1 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 116/197 (58.88%), Postives = 137/197 (69.54%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            +K+S+S L   DL GKRV VRVD NVPL D   ITDD R+RAA+PTI  L+   A+VILS+H GRPKG V     L  +  RLSELLG  V     CIG E +  V  +  G V+LLENVRF   EEKND EFAK+LASLA++YVNDAFG+AHRAHASTEGV KFL P VAG+LM KEL YL  A+  PK+ L  ++
Sbjct:    2 SKRSLSSLGAEDLCGKRVLVRVDFNVPLGDEGQITDDTRIRAALPTINDLLDKSARVILSAHFGRPKGEVNETMRLTAVAQRLSELLGKTVVKTESCIGAEAKSKVDAMSNGDVVLLENVRFISGEEKNDTEFAKELASLAEVYVNDAFGAAHRAHASTEGVTKFLSPCVAGYLMEKELKYLQGAIDQPKSPLAAIV 198          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_EXIS2 (Phosphoglycerate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=pgk PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.617e-54
Identity = 109/188 (57.98%), Postives = 144/188 (76.60%), Query Frame = 1
Query:   85 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNP 645
            KKS+   ++ D+KGKRVF RVD NVPL+D   ITDD R+RAA+PTIK+L+  GAKVIL+SH+GRPKG   P++SL P+V RLSELLG ++K+  +  G   E+ V+++ EG V++LENVRF+  E KNDPE A+  A LAD++VNDAFG+AHRAHASTEG+A  ++ +VAG L+ KEL  L  A+SNP
Sbjct:    3 KKSI---RDIDVKGKRVFTRVDFNVPLEDG-KITDDTRIRAALPTIKHLVDGGAKVILASHMGRPKGEKNPEFSLAPVVARLSELLGKDIKLVEEAYGPVAEEAVSKLEEGDVIVLENVRFYPGETKNDPELAEGFAKLADVFVNDAFGAAHRAHASTEGIAHHVETAVAGLLIEKELQVLGKALSNP 186          

HSP 2 Score: 22.3274 bits (46), Expect = 1.617e-54
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  677 KVSTKIGVIDH 709
            KV+ KIGVIDH
Sbjct:  198 KVADKIGVIDH 208          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_PROA2 (Phosphoglycerate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=pgk PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.754e-54
Identity = 106/190 (55.79%), Postives = 142/190 (74.74%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            L +   KGKR+ +RVD NVPLD N  IT+D R+  A+P+I+ ++  G ++IL SHLGRPKG VTP+ SL P+  RLSELL  +V MAN+CIG E  +    + +G V++LEN+RFH EEEKNDPEFA++LAS+ ++YVNDAFG+AHRAHASTEG+  ++  SVAGFL+ KEL YL  A++NP+   L +L
Sbjct:    6 LSDISCKGKRILMRVDFNVPLDLNGTITNDKRIIEALPSIRQVLETGGRLILMSHLGRPKGKVTPELSLAPVARRLSELLDTDVVMANNCIGTEAMQQALALQDGEVMMLENLRFHPEEEKNDPEFARELASMGEIYVNDAFGTAHRAHASTEGICHYVPISVAGFLIEKELRYLGNALANPERPFLAIL 195          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_MOOTA (Phosphoglycerate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=pgk PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.754e-54
Identity = 110/190 (57.89%), Postives = 142/190 (74.74%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            LK+ +L  KRV VRVD NVPL+    +TD+ R+RAA+PTI+YL+ HGA+VIL SHLGRPKG V  +  L P+   L  LLG +V   NDC+G EVE   A +  G VLLLEN+RFH EEEKNDP FA++LASLAD+YVNDAFG+AHRAHASTEGVA +L P+ AGFL+ KE++ L  A+++P+   + ++
Sbjct:    6 LKDLELNNKRVLVRVDFNVPLEAG-RVTDNTRIRAALPTIEYLLDHGARVILMSHLGRPKGKVKEELRLDPVARELESLLGRQVHKVNDCVGPEVEAAAAALKPGEVLLLENLRFHPEEEKNDPGFARQLASLADVYVNDAFGAAHRAHASTEGVAHYL-PAAAGFLLQKEIETLGKALADPERPFVAII 193          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_CHLTE (Phosphoglycerate kinase OS=Chlorobium tepidum GN=pgk PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.754e-54
Identity = 104/190 (54.74%), Postives = 143/190 (75.26%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            L +  L+GKRV +RVD NVPLD + NITD+ R+  A+P+I+ ++ +G ++IL SHLGRPKG V P +SL P+  RLSELL   V MA DCIG EV + V  + +G VL+LEN+RFH EEE NDP+FA++LASL ++YVNDAFG+AHRAHASTEG+  F++ +VAG+L+ KEL YL  A+++ +   + +L
Sbjct:    6 LSDISLQGKRVLMRVDFNVPLDQDRNITDEKRIVEALPSIRKVIDNGGRLILMSHLGRPKGKVNPAFSLSPVAKRLSELLDCPVTMAGDCIGTEVMQQVLALQDGDVLMLENLRFHPEEEANDPDFARELASLGEIYVNDAFGTAHRAHASTEGITHFMQTAVAGYLIEKELRYLGTALNDAQRPFVAIL 195          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_BACST (Phosphoglycerate kinase OS=Bacillus stearothermophilus GN=pgk PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.754e-54
Identity = 112/182 (61.54%), Postives = 138/182 (75.82%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNP 645
            +++ D++GKRVF RVD NVP++    ITDD R+RAA+PTI+YL+ HGAKVIL+SHLGRPKG V  +  L  +  RL ELL   V   N+ +G+EV+  V  + EG VLLLENVRF+  EEKNDPE AK  A LADLYVNDAFG+AHRAHASTEG+A +L P+VAGFLM KEL+ L  A+SNP
Sbjct:    6 IRDVDVRGKRVFCRVDFNVPMEQGA-ITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKELEVLGKALSNP 185          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_FERNB (Phosphoglycerate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pgk PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.290e-54
Identity = 114/194 (58.76%), Postives = 143/194 (73.71%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLLVVQG 681
            +++ DLKGKRV +RVD NVP+ D + +TDD R+  A+PTIKY++  GAKVIL +HLGRPKG   PKY++KP   RL++LLG EVK      GEEVEK VAE+ EG VL+LEN RF   EEKND E AKK ASLAD++VNDAFG+AHRAH+S  G+A+++ PSVAGFLM KE+ +L  A  NP     P +VV G
Sbjct:    6 IRDVDLKGKRVIMRVDFNVPIKDGV-VTDDTRIVEALPTIKYVLEQGAKVILLTHLGRPKGGPDPKYTVKPAAERLAQLLGKEVKFVPALYGEEVEKAVAELKEGEVLMLENTRFDPGEEKNDLELAKKWASLADIHVNDAFGTAHRAHSSNVGIAQYI-PSVAGFLMEKEIKFLSKATHNPDK---PYVVVLG 194          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_GEOSW (Phosphoglycerate kinase OS=Geobacillus sp. (strain WCH70) GN=pgk PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.991e-54
Identity = 110/182 (60.44%), Postives = 141/182 (77.47%), Query Frame = 1
Query:  103 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNP 645
            +++ D+KGKRVF RVD NVP+++   ITDD R+RAA+PTI+YLM  GAKVIL+SHLGRPKG V  +  L  +  RLSELLG  V   ++  G+ V++ ++++ EG VLLLENVRF+  EEKNDPE AK  A LAD+YVNDAFG+AHRAHASTEG+A +L P+VAGFLM KE++ L  A+SNP
Sbjct:    6 VRDVDVKGKRVFCRVDFNVPMENGA-ITDDTRIRAALPTIRYLMEQGAKVILASHLGRPKGKVVEELRLNAVARRLSELLGKHVTKTDEAYGDAVKEAISKMNEGDVLLLENVRFYPGEEKNDPELAKAFAELADIYVNDAFGAAHRAHASTEGIAHYL-PAVAGFLMEKEIEVLGKALSNP 185          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_ANAD2 (Phosphoglycerate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pgk PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.991e-54
Identity = 106/180 (58.89%), Postives = 141/180 (78.33%), Query Frame = 1
Query:  115 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP---KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNP 645
            +L GKRVF+RVD NVPLD    +TDD R+RAA+PTI++ +   AKVIL+SHLGRPKG      K +L+P   RLSELL  +V +A+DC+G+ V+K+V ++ +G VLLLEN+RFH EEEKND  FA++LASLAD++VNDAFG+AHRAHAST G+A+F+K   AGFL+ KE++YL  A+ +P
Sbjct:   10 ELAGKRVFIRVDFNVPLDPQGRVTDDARIRAALPTIRHAIQAKAKVILASHLGRPKGKPEDRQKLTLEPAAVRLSELLSQDVILADDCVGDGVKKLVRDLKDGHVLLLENLRFHPEEEKNDEAFARELASLADVWVNDAFGTAHRAHASTAGMARFVKEKAAGFLVQKEVEYLGKALGSP 189          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_PROMT (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=pgk PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.581e-54
Identity = 115/197 (58.38%), Postives = 137/197 (69.54%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            +K+S+S L   DL GKRV VRVD NVPL D   ITDD R+RAA+PTI  L+   A+VILS+H GRPKG V     L  +  RLSELLG  V     CIG E +  V  +  G V+LLENVRF   EEKND EFAK+LASLA++YVNDAFG+AHRAHASTEGV KFL P VAG+LM KEL YL  A+  P++ L  ++
Sbjct:    2 SKRSLSSLGAEDLCGKRVLVRVDFNVPLGDEGLITDDTRIRAALPTINDLLDKSARVILSAHFGRPKGQVNETMRLTAVAQRLSELLGKTVVKTESCIGAEAKSKVDAMSNGDVVLLENVRFISGEEKNDTEFAKELASLAEVYVNDAFGAAHRAHASTEGVTKFLSPCVAGYLMEKELKYLQGAIDQPQSPLAAIV 198          

HSP 2 Score: 22.3274 bits (46), Expect = 3.581e-54
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            Q P AAIVGGS+
Sbjct:  191 QSPLAAIVGGSK 202          
The following BLAST results are available for this feature:
BLAST of CX290540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PROM11.343e-5458.88Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_EXIS21.617e-5457.98Phosphoglycerate kinase OS=Exiguobacterium sibiric... [more]
PGK_PROA21.754e-5455.79Phosphoglycerate kinase OS=Prosthecochloris aestua... [more]
PGK_MOOTA1.754e-5457.89Phosphoglycerate kinase OS=Moorella thermoacetica ... [more]
PGK_CHLTE1.754e-5454.74Phosphoglycerate kinase OS=Chlorobium tepidum GN=p... [more]
PGK_BACST1.754e-5461.54Phosphoglycerate kinase OS=Bacillus stearothermoph... [more]
PGK_FERNB2.290e-5458.76Phosphoglycerate kinase OS=Fervidobacterium nodosu... [more]
PGK_GEOSW2.991e-5460.44Phosphoglycerate kinase OS=Geobacillus sp. (strain... [more]
PGK_ANAD22.991e-5458.89Phosphoglycerate kinase OS=Anaeromyxobacter dehalo... [more]
PGK_PROMT3.581e-5458.38Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]

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Properties
Property NameValue
Genbank descriptionC02025C10SK IF1 Citrus clementina cDNA clone C02025C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290540 ID=CX290540; Name=CX290540; organism=Citrus clementina; type=EST; length=733bp
TTCGGCCGAGGTCTCATTCCAAATCTACCAAAACCCTTTCTCGATTTCTC
TGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAAGCG
TTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTGGAT
CTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAGAGT
CCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCAAAG
TCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAGTAC
AGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGAGGT
TAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGGCTG
AAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCATAAG
GAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCTTGC
AGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATGCTT
CCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTCCTT
ATGNCAAAGGAACTAGATTATCTTGTTGTAGCTGTTTCAAATCCCAAGAA
CCATTTGCTGCCATTGTTGGTGGTTCAAGGTGTCAACTAAGATCGGTGTT
ATTGATCACTTTTGGAGAAAGTGACATTCTATT
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