CX290541

Overview
NameCX290541
Unique NameCX290541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_YERPG (Phosphoglycerate kinase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 80/173 (46.24%), Postives = 112/173 (64.74%), Query Frame = 1
Query:   94 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 606
            SV  + + DL GKRV +R DLNVP+ +   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L E L   V++A D +         EI  G +++LENVRF+K E+K+D   +KK A+L D+YV DAFG+AHRA AST GV KF   + AG L+
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKEG-KVTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKEKLSSPVRLAKDYLDG------VEIAAGELVVLENVRFNKGEKKDDEALSKKYAALCDVYVMDAFGTAHRAQASTHGVGKFAPIACAGPLL 167          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_YERPE (Phosphoglycerate kinase OS=Yersinia pestis GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 80/173 (46.24%), Postives = 112/173 (64.74%), Query Frame = 1
Query:   94 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 606
            SV  + + DL GKRV +R DLNVP+ +   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L E L   V++A D +         EI  G +++LENVRF+K E+K+D   +KK A+L D+YV DAFG+AHRA AST GV KF   + AG L+
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKEG-KVTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKEKLSSPVRLAKDYLDG------VEIAAGELVVLENVRFNKGEKKDDEALSKKYAALCDVYVMDAFGTAHRAQASTHGVGKFAPIACAGPLL 167          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_YERPB (Phosphoglycerate kinase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 80/173 (46.24%), Postives = 112/173 (64.74%), Query Frame = 1
Query:   94 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 606
            SV  + + DL GKRV +R DLNVP+ +   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L E L   V++A D +         EI  G +++LENVRF+K E+K+D   +KK A+L D+YV DAFG+AHRA AST GV KF   + AG L+
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKEG-KVTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKEKLSSPVRLAKDYLDG------VEIAAGELVVLENVRFNKGEKKDDEALSKKYAALCDVYVMDAFGTAHRAQASTHGVGKFAPIACAGPLL 167          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_YERPA (Phosphoglycerate kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 80/173 (46.24%), Postives = 112/173 (64.74%), Query Frame = 1
Query:   94 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 606
            SV  + + DL GKRV +R DLNVP+ +   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L E L   V++A D +         EI  G +++LENVRF+K E+K+D   +KK A+L D+YV DAFG+AHRA AST GV KF   + AG L+
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKEG-KVTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKEKLSSPVRLAKDYLDG------VEIAAGELVVLENVRFNKGEKKDDEALSKKYAALCDVYVMDAFGTAHRAQASTHGVGKFAPIACAGPLL 167          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_YERP3 (Phosphoglycerate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 80/173 (46.24%), Postives = 112/173 (64.74%), Query Frame = 1
Query:   94 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 606
            SV  + + DL GKRV +R DLNVP+ +   +T D R+RA++PTI+  +  GAKV+++SHLGRP       ++SL P+V  L E L   V++A D +         EI  G +++LENVRF+K E+K+D   +KK A+L D+YV DAFG+AHRA AST GV KF   + AG L+
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKEG-KVTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKEKLSSPVRLAKDYLDG------VEIAAGELVVLENVRFNKGEKKDDEALSKKYAALCDVYVMDAFGTAHRAQASTHGVGKFAPIACAGPLL 167          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_PSEFS (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain SBW25) GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 80/174 (45.98%), Postives = 115/174 (66.09%), Query Frame = 1
Query:   97 VSVLK--EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 606
            ++VLK  + DL+GKRV +R DLNVP+ D + +T D R+ A++PTIK  +  GA V++ SHLGRP     + + SLKP+   LS+ LG +V +  D +G        ++  G ++L ENVRF+K E+KN  E A++ A+L D++V DAFG+AHRA  ST GVAKF K + AG L+
Sbjct:    1 MTVLKMTDLDLQGKRVLIREDLNVPVKDGV-VTSDARILASLPTIKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVAEYLSKALGRDVPLVADYLGG------VDVKAGDIVLFENVRFNKGEKKNSDELAQQYAALCDVFVMDAFGTAHRAEGSTHGVAKFAKVAAAGPLL 167          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_ONYPE (Phosphoglycerate kinase OS=Onion yellows phytoplasma GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 74/175 (42.29%), Postives = 114/175 (65.14%), Query Frame = 1
Query:  106 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            L   ++  K+V +R DLNVPL++++ ITDDNR++A +PT+KYL+   AKVI+ SHLGR K    K  +SL+ +  +++  L  ++K   +  G  + + V ++  G VL+++N RF     K+E KNDPE  K  ASL D++VNDAFG+ HR HAS  G+A ++K    GFL+++
Sbjct:    5 LTNMNITNKKVLLRADLNVPLENSV-ITDDNRIKAILPTLKYLVQQKAKVIIFSHLGRVKTEADKAHFSLQVVAEKIAFYLQQKLKFVPETQGNTLNQAVGQMLPGDVLVVQNTRFEDVPFKKESKNDPELGKYWASLGDVFVNDAFGTCHRTHASNVGIATYIKEKCFGFLVEK 178          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_NOCFA (Phosphoglycerate kinase OS=Nocardia farcinica GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 85/184 (46.20%), Postives = 116/184 (63.04%), Query Frame = 1
Query:   79 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH-KEEEKNDPEFAKKLASLADL------YVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 606
            MA K    +L E  ++G+ V VR DLNVPLDDN  ITD  R+ A++PT+K L+  GAKV++++HLGRPKG   PK+SL P+  +L+ELLG  V++A D +G +       + +G VLLLENVRF  +E  K++ E  K  A+L +L      +V+D FG  HR  AS   VAK L P  AG L+
Sbjct:    1 MAVKTLQDLLNEG-VEGRGVLVRSDLNVPLDDNGQITDPGRIIASIPTLKALVEAGAKVVVTAHLGRPKGEPDPKFSLAPVAAKLAELLGRNVQLAGDVVGYDALSRSEGLTDGDVLLLENVRFDPRETSKDEAERGKLAAALVELVGEDGAFVSDGFGVVHRKQASVYDVAKLL-PHYAGTLV 182          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_LEIXX (Phosphoglycerate kinase OS=Leifsonia xyli subsp. xyli GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 83/167 (49.70%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  121 LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKND----PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 606
            L GKRV VR DLNVPL D   ITDD RVRA++PT+  L+  GAKV + SHLGRP+G    +YSL P+  RLSELLG  V  A+D +G    + V+ + +G V LLEN+RF+  E   D      FA +LA+  D +V+D FG  HR  AS   +AK L PS AG L+
Sbjct:   12 LAGKRVVVRCDLNVPLKDG-KITDDGRVRASIPTLHALIAQGAKVAIVSHLGRPEGAPDAQYSLAPVAQRLSELLGKPVTFASDTVGAGAAEAVSGLEDGDVALLENLRFNPGETSKDEGEREAFAAELAAFGDAFVSDGFGVVHRKQASVYELAKAL-PSAAGALI 176          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_FRAP2 (Phosphoglycerate kinase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=pgk PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 76/173 (43.93%), Postives = 111/173 (64.16%), Query Frame = 1
Query:   94 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLM 606
            S   LK+ DLK K+V VRVD NVP+ D   +T   R+ AA+PTI+Y++  G  VIL SHLGRP       ++SL+P+   LS+++   V+ A D +         +   G +++ +NVRF+K E+K+D E +KK+ASL D++V DAF +AHRA AST GVAK++  + AG L+
Sbjct:    2 SFLTLKDVDLKNKKVLVRVDFNVPVKDG-KVTSKVRIEAAIPTIQYILDQGGAVILMSHLGRPTEGEYDSQFSLEPVAEVLSQIIKKPVRFAKDWLNG------VDAKAGEIVMCDNVRFNKGEKKSDDELSKKIASLGDVFVMDAFATAHRAQASTYGVAKYVPVACAGLLL 167          
The following BLAST results are available for this feature:
BLAST of CX290541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_YERPG1.031e-3246.24Phosphoglycerate kinase OS=Yersinia pestis bv. Ant... [more]
PGK_YERPE1.031e-3246.24Phosphoglycerate kinase OS=Yersinia pestis GN=pgk ... [more]
PGK_YERPB1.031e-3246.24Phosphoglycerate kinase OS=Yersinia pseudotubercul... [more]
PGK_YERPA1.031e-3246.24Phosphoglycerate kinase OS=Yersinia pestis bv. Ant... [more]
PGK_YERP31.031e-3246.24Phosphoglycerate kinase OS=Yersinia pseudotubercul... [more]
PGK_PSEFS1.031e-3245.98Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]
PGK_ONYPE1.031e-3242.29Phosphoglycerate kinase OS=Onion yellows phytoplas... [more]
PGK_NOCFA1.031e-3246.20Phosphoglycerate kinase OS=Nocardia farcinica GN=p... [more]
PGK_LEIXX1.031e-3249.70Phosphoglycerate kinase OS=Leifsonia xyli subsp. x... [more]
PGK_FRAP21.031e-3243.93Phosphoglycerate kinase OS=Francisella philomiragi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02025C11SK IF1 Citrus clementina cDNA clone C02025C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290541 ID=CX290541; Name=CX290541; organism=Citrus clementina; type=EST; length=614bp
GATTCGGCCGAGGTCTCATTCCAAAATCTACCAAAACCCTTTCTCGATTT
CTCTGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAA
GCGTTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTG
GATCTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAG
AGTCCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCA
AAGTCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAG
TACAGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGA
GGTTAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGG
CTGAAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCAT
AAGGAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCT
TGCAGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATG
CTTCCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTC
CTTATGCAAAGGAA
back to top