CX290543

Overview
NameCX290543
Unique NameCX290543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.949e-51
Identity = 96/191 (50.26%), Postives = 126/191 (65.97%), Query Frame = 2
Query:   35 PHG-LKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDE-NDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P+G L+L IEDYPYA DGLL+W AI+ W  TYV HYYP ++ I DD+ELQ+W+ E    GHAD + E WWP L + ++L   L TI+W+ S  HAA+NFGQYP  GY+PNRP + RR +P E    +   F+  P K  L   PS  Q+   +A++D LSTHS DEEY+G  ++P  W+ DG I +AF EF
Sbjct:  684 PNGELELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDMRDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEP-AWTKDGVINQAFEEF 873          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.324e-51
Identity = 94/191 (49.21%), Postives = 123/191 (64.40%), Query Frame = 2
Query:   29 TQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            + PHG++LLIEDYPYA DGL IWSAI+ WV  Y S YY +  +I  D ELQ+W+ E    GH D ++E WWP +    +L+   TTIIW+ASA HAA+NFGQYPY GY+PNRP + RR +P+   PEY      P K FL  + + LQ    +++V+ LS H+ DE YLG+R+ P  W+ D E   AF  F
Sbjct:  619 SSPHGVRLLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESP-EWTKDKEPLAAFDRF 808          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.672e-51
Identity = 93/191 (48.69%), Postives = 125/191 (65.45%), Query Frame = 2
Query:   29 TQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            + P+GL+LLIEDYPYA DGL IW+AI+ WV+ YVS YY   + I +D ELQ W+ E +  GH DL+ + WWP L   D+LV + T IIW ASA HAA+NFGQYPYGG + NRP L RRL+P+E   EY   +    K +L  +    Q    ++V++ LS H+ DE YLG+R+ P  W+ D +  +AF +F
Sbjct:  622 SSPYGLRLLIEDYPYAVDGLEIWTAIKTWVQDYVSLYYATDNDIKNDSELQHWWKEVVEKGHGDLKDKPWWPKLQTFDELVEVCTIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEEGTAEYDEMVKSSQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPH-WTSDSKALQAFQKF 811          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.814e-50
Identity = 93/193 (48.19%), Postives = 121/193 (62.69%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFS 604
            P+ P  +KLLI+DYPYA DGL IW AIE WV  Y + YYPN   +  D ELQ+W+ E    GH DL+   WWP + +  +L    TTIIW+ASA HAA+NFGQYPY GY+PNRP + RR +P+    EYT     P K+F+  + S  Q    +++++ LS HS DE YLG+R  P  W+ D +  EAF  FS
Sbjct:  614 PSSPSKVKLLIKDYPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDADWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRPTISRRPMPEPGSKEYTELDENPEKFFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTP-EWTSDPKALEAFKRFS 805          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.675e-50
Identity = 93/192 (48.44%), Postives = 120/192 (62.50%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P   +G+KLLIEDYP+A DGL IWSAI+ WV  Y + YY N   +  D E+QSW+ E    GH D RHESWWP++   DDL+   T IIW+ASA HAA+NFGQYPY G++PNRP + RR +P+    EY     +    FL  +   LQ    +++++ LS HS DE YLG+R  P  W+ D E  EAF  F
Sbjct:  638 PNSDNGVKLLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRFMPEPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSP-NWTADDEPLEAFKRF 828          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.800e-50
Identity = 89/192 (46.35%), Postives = 123/192 (64.06%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P+ PHG+KL+IEDYPYA+DGL IW AI+ WV  YV+ YY +   +  D ELQ+W+ E +  GH DL+ + WWP + + ++LV + TT+IW+ASA HAA+NFGQYPYGG + NRP + RR +P++   EY +    P K FL  +    +    + V++ LS H+ DE YLGER     W+ D    EAF  F
Sbjct:  503 PSAPHGVKLVIEDYPYASDGLEIWDAIKSWVVEYVAFYYKSDEVLQQDSELQAWWKELVQVGHGDLKDKPWWPKMQSRENLVEVSTTLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYAALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEIYLGERDGGDHWTSDAGPLEAFKRF 694          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.397e-49
Identity = 90/191 (47.12%), Postives = 123/191 (64.40%), Query Frame = 2
Query:   29 TQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            + PHG++LLI+DYPYA DGL IWSAI+ WV  Y S YY ++ +I  D ELQ+W+ E    GH D ++E WW  +    +L+   TTIIW+ASA HAA+NFGQYPY GY+PNRP + R+ +P+   PEY      P K FL  + + LQ    +++++ LS H+ DE YLG+R+ P  W+ D E   AF  F
Sbjct:  618 SSPHGVRLLIDDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFMPEPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESP-EWTKDKEPLAAFERF 807          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.064e-49
Identity = 87/192 (45.31%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P+ PHG++LLIEDYPYA+DGL IW AI+ WV+ YVS YY +  ++  D ELQ+W+ E +  GH DL+ + WW  +   ++LV     +IW+ASA HAA+NFGQYPYGG + NRP + RR +P++  PEY +    P K FL  +    +    + V++ LS H+ DE YLG+R     W+ D    EAF  F
Sbjct:  609 PSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRF 800          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.307e-49
Identity = 91/189 (48.15%), Postives = 122/189 (64.55%), Query Frame = 2
Query:   44 LKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVP--DENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFS 604
            L+L I+DYPYA DGLLIW +I+ W   YV  YY +   +  D+EL++W+ E    GHAD + E WWP     ++LV ILT I+W+ S  HAA+NFGQY Y GY PNRP ++RR +P  +  D E   F+A P +  L +LPS +QA K MA +D LS+HSPDEEY+GE  +P  W  +  +  AF +FS
Sbjct:  657 LELAIKDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEP-AWLAEPMVKAAFEKFS 844          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49
Identity = 86/192 (44.79%), Postives = 125/192 (65.10%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P+ P+GL+L++EDYPYA DGL IW  I+ WV+ YVS YYP +  +  D ELQ+W+ E++  GH DL+ + WWP L    DL+   + IIW+ASA HAA+NFGQYPYGG++ NRP + RRL+P+    EY    +   K +L  +   ++A   ++V++ LS H+ DE YLG+R  P  W+ + +  +AF  F
Sbjct:  618 PSSPYGLRLVVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKEAVEKGHGDLKDKPWWPKLNTPQDLIHTCSIIIWIASALHAAVNFGQYPYGGFILNRPTITRRLLPEPGTKEYGELTSNYQKAYLRTITGKVEAIVDLSVIEILSRHASDEVYLGQRDNP-NWTNNIKALQAFKRF 808          
The following BLAST results are available for this feature:
BLAST of CX290543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
LOX21_HORVU1.949e-5150.26Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX1_SOLTU3.324e-5149.21Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX2_PEA9.672e-5148.69Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX1_ORYSJ2.814e-5048.19Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX5_ARATH3.675e-5048.44Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXB_PHAVU4.800e-5046.35Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOXA_SOLLC1.397e-4947.12Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX4_SOYBN4.064e-4945.31Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX23_HORVU5.307e-4948.15Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXA_PHAVU6.932e-4944.79Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC02025D01SK IF1 Citrus clementina cDNA clone C02025D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290543 ID=CX290543; Name=CX290543; organism=Citrus clementina; type=EST; length=657bp
ATTCGGCCGAGGATGGCAGTCCTGACCCACACAGCCACATGGTTTGAAGT
TGCTAATTGAGGACTACCCATACGCAGCAGACGGACTTCTAATTTGGTCA
GCAATTGAGGATTGGGTGCGCACTTATGTGAGCCATTACTACCCAAATTC
AAGCCAAATTTGTGACGACAAAGAGCTACAATCATGGTACGCTGAGTCCA
TCAACACAGGCCATGCCGATCTTCGCCACGAAAGCTGGTGGCCCACATTA
ATCAACGGTGATGATCTGGTGTCCATCCTAACTACGATCATCTGGCTCGC
ATCTGCACAGCACGCTGCACTCAATTTTGGACAGTACCCGTATGGTGGTT
ACGTGCCCAATCGCCCTCCCCTAATGAGAAGATTAGTACCCGACGAAAAT
GACCCCGAGTATACCAGTTTCTTAGCTGAACCACACAAGTATTTCCTGCT
GGCATTGCCAAGCGTACTACAAGCGACCAAATACATGGCCGTGGTAGACA
CATTGTCTACACATTCGCCGGACGAGGAGTACCTCGGGGAACGACAACAG
CCGTGGATTTGGTCCGGCGATGGTGAGATAACCGAGGCATTTTTTGAATT
TTCTGCGGAGAATAGACGGATAGAAAAAGAAATCGAGAAAAGAAACAGTG
ATCCAAG
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