CX290543

Overview
NameCX290543
Unique NameCX290543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.053e-49
Identity = 94/198 (47.47%), Postives = 129/198 (65.15%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTS---FLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYL-GERQQPWIWSGDGEITEAFFEFSA 607
            PT  HGL+L IEDYP+A DGLLIW AI+ WV+ YV+ +YP++  +  D+ELQ+++ E    GH D +   WWP L + + L   LTTI+W+A+A HAA+NFGQY +GGY PNRP + R ++P E   +  +   FL  P +      PS +QAT  MAV+D LSTHS DEEYL GE+ +P  W+ D  +  A+  F+A
Sbjct:  695 PTAEHGLRLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRP--WNSDAAVQAAYAGFTA 890          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.182e-48
Identity = 88/194 (45.36%), Postives = 120/194 (61.86%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSA 607
            P  P+ ++LLIEDYPYA DGL +W AIE W   Y++ YYPN   +  D ELQ+W+ E    GH D++  +WWP +    +LV    TIIW+ SA HAA+NFGQYPY GY+PNRP + RR +P+    EY     +P K F+  +   +QA   +++++ LS HS DE YLG+R  P  W+ D +  EAF  F A
Sbjct:  621 PASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSRRPMPEPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHSSDEVYLGQRDTP-EWTSDAKALEAFKRFGA 813          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.544e-48
Identity = 94/198 (47.47%), Postives = 129/198 (65.15%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTS---FLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYL-GERQQPWIWSGDGEITEAFFEFSA 607
            PT  HGLKL IEDYP+A DGLLIW AI+ WV+ YV+ +YP++  +  D+ELQ+++ E    GH D +   WWP L + + L   LTTI+W+A+A HAA+NFGQY +GGY PNRP + R ++P E   +  +   FL  P +      PS +QAT  MAV+D LS+HS DEEYL GE+ +P  W+ D  +  A+  F+A
Sbjct:  678 PTAEHGLKLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRP--WNSDAAVQAAYDGFAA 873          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.017e-48
Identity = 91/192 (47.40%), Postives = 120/192 (62.50%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P  PHGL+L I+DYPYA DGL +W AIE WVR Y+  +Y     I  D ELQ+W+ E    GH D + E WWP +   ++LV   T IIW+ASA HAA+NFGQYP  GY+PNRP + R+ +P EN PE+      P K FL  + + LQ    +++++ LSTHS DE YLG+R     W+ + E  EAF +F
Sbjct:  616 PEAPHGLRLRIKDYPYAVDGLEVWYAIESWVRDYIFLFYKIEEDIQTDTELQAWWKEVREEGHGDKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRPTISRQYMPKENTPEFEELEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSK-EWAAEKEALEAFEKF 806          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.664e-48
Identity = 85/192 (44.27%), Postives = 122/192 (63.54%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P+ P G+KL++EDYPYA DGL IW+ I+ WV+ YVS YY +  ++  D ELQ+W+ E +  GH D ++E WWP +   +DL+ + + +IW ASA HAA+NFGQY YGG + NRP L RR +P++   E+   +  P K +L  +    Q    ++V++ LS H+ DE YLGER  P  W+ D    EAF +F
Sbjct:  618 PSSPCGVKLVVEDYPYAVDGLEIWAIIKTWVQDYVSLYYTSDEKLRQDSELQAWWKELVEVGHGDKKNEPWWPKMQTREDLIEVCSIVIWTASALHAAVNFGQYSYGGLILNRPTLSRRFMPEKGSAEFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNP-NWTSDKRALEAFKKF 808          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.707e-47
Identity = 90/192 (46.88%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   29 TQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFS 604
            T P+ ++LLI+DYPYAADGL IW AIE WV  Y++ YY +   +  D ELQ+W+AE    GH DL+  +WWP +    +L    TTIIW+ASA HAA+NFGQYPY GY+PNRP + RR +P+     Y     +P + F+  + S LQ    +++++ LS HS DE YLG+R  P  W+ D    EAF  FS
Sbjct:  618 TSPYKVRLLIKDYPYAADGLEIWHAIEQWVGEYLAIYYTDDGVLRGDAELQAWWAEVREVGHGDLKGAAWWPRMDAVSELRDACTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRRMPEPGTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDTP-AWTSDARALEAFRRFS 808          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.968e-47
Identity = 84/192 (43.75%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P+ PHG++LLIEDYPYA+DGL IW+AI+ WV  YV+ YY + + I  D ELQ+++ E +  GH DL+  +WW  + N  +L+   + +IW+ASA HAA+NFGQYPYGGY+ NRP   R+ +P++  PEY        K +L  +         + +++ LS H+ DE+YLGER +   W+ D    EAF  F
Sbjct:  622 PSSPHGVRLLIEDYPYASDGLEIWAAIKSWVEEYVNFYYKSDAAIAQDAELQAFWKELVEVGHGDLKSATWWFKMQNRKELIEACSILIWIASALHAAVNFGQYPYGGYILNRPTKSRKFMPEKGTPEYDDLAKNYEKAYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGERIEGDDWTTDSVPKEAFKRF 813          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.488e-47
Identity = 88/192 (45.83%), Postives = 117/192 (60.94%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            P+ PHG++L+IEDYPYA DGL IW AI+ WV  YV  YY +   + +D ELQ+ + E +  GH D ++E WWP +   ++LV     IIW ASA HAA+NFGQYPYGG + NRP L RR +P++   EY      P K +L  +    Q    ++V++ LS H+ DE YLGER  P  W+ D    EAF  F
Sbjct:  614 PSCPHGIRLVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNP-NWTSDTRALEAFKRF 804          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.488e-47
Identity = 85/193 (44.04%), Postives = 122/193 (63.21%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFS 604
            P+ P+ ++LL+ DYPYAADGL IW AIE +V  Y++ YYPN   +  D E+Q+W+ E+   GH DL+   WWP + +  +L    TTIIW+ SA HAA+NFGQYPY G++PNRP + RR +P+    EY     +P + F+  + S +Q    +++++ LS HS DE YLG+R  P  W+ D +  E F  FS
Sbjct:  613 PSSPYKVRLLVSDYPYAADGLAIWHAIEQYVSEYLAIYYPNDGVLQGDTEVQAWWKETREVGHGDLKDAPWWPKMQSVPELAKACTTIIWIGSALHAAVNFGQYPYAGFLPNRPTVSRRRMPEPGTEEYAELERDPERAFIHTITSQIQTIIGVSLLEVLSKHSSDELYLGQRDTP-EWTSDPKALEVFKRFS 804          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.368e-46
Identity = 87/197 (44.16%), Postives = 121/197 (61.42%), Query Frame = 2
Query:   26 PTQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLA---EPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSA 607
            PT P+ ++LLI+DYPYA DGL+IW AIE WV  Y++ YYPN   +  D+ELQ+W+ E    GH DL+ + WWP +    +L    T IIW+ASA HAA+NFGQYPY G++PNRP + RR +P+    EY        E    F+  + S  Q    +++++ LS HS DE YLG+R  P  W+ D +  +AF  F +
Sbjct:  624 PTSPYNVRLLIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWWKEVREVGHGDLKDQDWWPKMDTVQELTRACTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRPMPEPGTEEYAKLERGGDEADLVFIHTITSQFQTILGISLIEILSKHSSDEVYLGQRDTP-EWTSDAKALDAFKRFGS 819          
The following BLAST results are available for this feature:
BLAST of CX290543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
LOXC2_ORYSJ9.053e-4947.47Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX2_ORYSJ1.182e-4845.36Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOXC1_ORYSJ1.544e-4847.47Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX1_ARATH2.017e-4847.40Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX3_PEA7.664e-4844.27Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX3_ORYSJ1.707e-4746.88Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX1_LENCU4.968e-4743.75Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX3_SOYBN6.488e-4745.83Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX1_HORVU6.488e-4744.04Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX4_ORYSJ9.368e-4644.16Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC02025D01SK IF1 Citrus clementina cDNA clone C02025D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290543 ID=CX290543; Name=CX290543; organism=Citrus clementina; type=EST; length=657bp
ATTCGGCCGAGGATGGCAGTCCTGACCCACACAGCCACATGGTTTGAAGT
TGCTAATTGAGGACTACCCATACGCAGCAGACGGACTTCTAATTTGGTCA
GCAATTGAGGATTGGGTGCGCACTTATGTGAGCCATTACTACCCAAATTC
AAGCCAAATTTGTGACGACAAAGAGCTACAATCATGGTACGCTGAGTCCA
TCAACACAGGCCATGCCGATCTTCGCCACGAAAGCTGGTGGCCCACATTA
ATCAACGGTGATGATCTGGTGTCCATCCTAACTACGATCATCTGGCTCGC
ATCTGCACAGCACGCTGCACTCAATTTTGGACAGTACCCGTATGGTGGTT
ACGTGCCCAATCGCCCTCCCCTAATGAGAAGATTAGTACCCGACGAAAAT
GACCCCGAGTATACCAGTTTCTTAGCTGAACCACACAAGTATTTCCTGCT
GGCATTGCCAAGCGTACTACAAGCGACCAAATACATGGCCGTGGTAGACA
CATTGTCTACACATTCGCCGGACGAGGAGTACCTCGGGGAACGACAACAG
CCGTGGATTTGGTCCGGCGATGGTGAGATAACCGAGGCATTTTTTGAATT
TTCTGCGGAGAATAGACGGATAGAAAAAGAAATCGAGAAAAGAAACAGTG
ATCCAAG
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