CX290543

Overview
NameCX290543
Unique NameCX290543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.400e-41
Identity = 84/191 (43.98%), Postives = 109/191 (57.07%), Query Frame = 2
Query:   29 TQPHGLKLLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEF 601
            + PHG++LLI DYPYA DGL IW+AI+ WV  Y   YY +   +  D ELQ+W+ E    GH D + E+WWP L    +L    T IIW+ASA HAAL+FG Y Y GY+PNRP L   L+P+    EY      P K FL      LQ+   +++ +  S H+ DE YLG+R     W+ D E   AF  F
Sbjct:  617 SSPHGIRLLILDYPYAVDGLEIWAAIKSWVTEYCKFYYKSDETVEKDTELQAWWKELREEGHGDKKDEAWWPKLQTRQELRDCCTIIIWIASALHAALHFGLYSYAGYLPNRPTLSCNLMPEPGSVEYEELKTNPDKVFLKTFVPQLQSLLEISIFEVSSRHASDEVYLGQRDS-IEWTKDKEPLVAFERF 806          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 57/163 (34.97%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   50 LLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            L I +Y Y  DGL IW+AIE +V   VS+YYP+ + +  D ELQ+W  E             +   L    +LV  LT II+  SAQHAA N GQ+ +G ++PN P  MR+  P +   + T       K +L  LP V    + + +   +S    D+  LG
Sbjct:  501 LTIPNYHYRDDGLKIWAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEIFAQAFLGRESSGFPSRLCTPGELVKYLTAIIFNCSAQHAAFNSGQHDFGAWMPNAPSSMRQ-PPPQTKGDTTM------KSYLDTLPEVNTTCRNLLLFWLVSQEPKDQRPLG 656          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.079e-17
Identity = 56/163 (34.36%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   50 LLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            L I +Y Y  DGL IW+AIE +V   V +YYP+ + +  D ELQ+W  E             +   L    ++V  LT II+  SAQHAA+N GQ+ +G ++PN P  MR+  P       T+ L    K +L  LP V  +   + +   +S    D+  LG
Sbjct:  501 LAIPNYHYRDDGLKIWAAIESFVSEIVGYYYPSDASVQQDSELQAWTGEIFAQAFLGRESSGFPSRLCTPGEMVKFLTAIIFNCSAQHAAVNSGQHDFGAWMPNAPSSMRQPPPQTKG---TTTL----KTYLDTLPEVNISCNNLLLFWLVSQEPKDQRPLG 656          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.137e-17
Identity = 55/162 (33.95%), Postives = 87/162 (53.70%), Query Frame = 2
Query:   56 IEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLIN-GDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            I  Y Y  DG+ IW AI+ +V   VS YYP+ + + DD+ELQ+W  E  + G    R  S  P+L++  + LV  +T +I+  SA+HAA++ GQ+    ++PN PP M      +  P  +   A P   F+  LP+V  ++ ++  +  LS    D+  LG
Sbjct:  469 IPGYYYRDDGMQIWGAIKSFVSEIVSIYYPSDTSVQDDQELQAWVREIFSEGFLG-RESSGMPSLLDTREALVQYITMVIFTCSAKHAAVSSGQFDSCVWMPNLPPTM------QLPPPTSKGQARPES-FIATLPAVNSSSYHIIALWLLSAEPGDQRPLG 622          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: AOSL_PLEHO (Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.659e-16
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   71 YAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAE------SINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            Y  DGL +W AIE ++   ++ +Y N   +  D E+QSW  +       +N GH D    +   +  + + L  +LT++++  S QHAA+NF Q  + G+ PN P ++R   P +   E T       +  L  LPS  QA K +A V  L+  S DE YLG
Sbjct:  860 YRDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNGWRVNPGHQDHGVPA---SFESREQLKEVLTSLVFTFSCQHAAVNFSQKDHYGFTPNAPAVLRH-PPPKKKGEATL------QSILSTLPSKSQAAKAIATVYILTKFSEDERYLG 1011          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX5_MESAU (Arachidonate 5-lipoxygenase OS=Mesocricetus auratus GN=ALOX5 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 50/158 (31.65%), Postives = 80/158 (50.63%), Query Frame = 2
Query:   65 YPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            Y Y  DGLL+W AI+ +    VS YY +   + +D+ELQ +  +    G    +   +  ++ + + L   LT +I+ ASAQHAA+NFGQY +  ++PN PP MR        P  T+      +  +  LP   ++  ++  V  LS    +E +LG
Sbjct:  468 YFYRDDGLLVWEAIQSFTSEVVSIYYEDDQVVMEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRA-------PPATAKGVVTIEQIVATLPDRGRSCWHLGAVWALSQFQENELFLG 618          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX5_MOUSE (Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alox5 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 2
Query:   65 YPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVP 391
            Y Y  DGLL+W AI+ +    VS YY N   + +D+ELQ +  +    G    +   +  ++ + + L   LT +I+ ASAQHAA+NFGQY +  ++PN PP MR   P
Sbjct:  469 YFYRDDGLLVWEAIQSFTMEVVSIYYENDQVVEEDQELQDFVKDVYVYGMRGKKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPP 577          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOXA_PSEAE (Arachidonate 15-lipoxygenase OS=Pseudomonas aeruginosa GN=loxA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 2
Query:   50 LLIEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVP 358
            L + DYPY  DGLL+W+AI  W   YV+ YY +   +  D EL +W  E I +G       + +  +     LV +LT +I+ ASAQHAA+NF Q     Y P
Sbjct:  473 LALPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEVIGSGKV-----AGFRPITGRSQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAP 570          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX5_RAT (Arachidonate 5-lipoxygenase OS=Rattus norvegicus GN=Alox5 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 8.552e-15
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 2
Query:   65 YPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVP 391
            Y Y  DGLL+W AI+ +    VS YY +   + +D+ELQ +  +    G    +   +  ++ + + L   LT +I+ ASAQHAA+NFGQY +  ++PN PP MR   P
Sbjct:  468 YFYRDDGLLVWEAIQSFTTEVVSIYYEDDQVVEEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPP 576          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 2
Query:   56 IEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            I  Y Y  DG+ IW A+E +V   +  YYP+   + DD+ELQ+W  E  + G  +        +L   + LV  +T +I+  SA+HAA++ GQ+    ++PN PP M+        P  TS      + F+  LP V      +  +  LS    D+  LG
Sbjct:  468 IPGYYYRDDGMQIWGAVERFVSEIIGIYYPSDESVQDDRELQAWVREIFSKGFLNQESSGIPSSLETREALVQYVTMVIFTCSAKHAAVSAGQFDSCAWMPNLPPSMQL-------PPPTSKGLATCEGFIATLPPVNATCDVILALWLLSKEPGDQRPLG 621          
The following BLAST results are available for this feature:
BLAST of CX290543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
LOXB_SOLLC1.400e-4143.98Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOXE3_MOUSE6.328e-1834.97Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LOXE3_HUMAN1.079e-1734.36Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LX15B_MOUSE9.137e-1733.95Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]
AOSL_PLEHO2.659e-1633.33Allene oxide synthase-lipoxygenase protein OS=Plex... [more]
LOX5_MESAU1.319e-1531.65Arachidonate 5-lipoxygenase OS=Mesocricetus auratu... [more]
LOX5_MOUSE2.251e-1538.53Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alo... [more]
LOXA_PSEAE6.548e-1539.81Arachidonate 15-lipoxygenase OS=Pseudomonas aerugi... [more]
LOX5_RAT8.552e-1537.61Arachidonate 5-lipoxygenase OS=Rattus norvegicus G... [more]
LX15B_HUMAN1.117e-1431.06Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02025D01SK IF1 Citrus clementina cDNA clone C02025D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290543 ID=CX290543; Name=CX290543; organism=Citrus clementina; type=EST; length=657bp
ATTCGGCCGAGGATGGCAGTCCTGACCCACACAGCCACATGGTTTGAAGT
TGCTAATTGAGGACTACCCATACGCAGCAGACGGACTTCTAATTTGGTCA
GCAATTGAGGATTGGGTGCGCACTTATGTGAGCCATTACTACCCAAATTC
AAGCCAAATTTGTGACGACAAAGAGCTACAATCATGGTACGCTGAGTCCA
TCAACACAGGCCATGCCGATCTTCGCCACGAAAGCTGGTGGCCCACATTA
ATCAACGGTGATGATCTGGTGTCCATCCTAACTACGATCATCTGGCTCGC
ATCTGCACAGCACGCTGCACTCAATTTTGGACAGTACCCGTATGGTGGTT
ACGTGCCCAATCGCCCTCCCCTAATGAGAAGATTAGTACCCGACGAAAAT
GACCCCGAGTATACCAGTTTCTTAGCTGAACCACACAAGTATTTCCTGCT
GGCATTGCCAAGCGTACTACAAGCGACCAAATACATGGCCGTGGTAGACA
CATTGTCTACACATTCGCCGGACGAGGAGTACCTCGGGGAACGACAACAG
CCGTGGATTTGGTCCGGCGATGGTGAGATAACCGAGGCATTTTTTGAATT
TTCTGCGGAGAATAGACGGATAGAAAAAGAAATCGAGAAAAGAAACAGTG
ATCCAAG
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