CX290543

Overview
NameCX290543
Unique NameCX290543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 2
Query:   56 IEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVP 358
            + DYPY  DGLL+W+AI  W   YV+ YY +   +  D EL +W  E I +G       + +  +     LV +LT +I+ ASAQHAA+NF Q     Y P
Sbjct:  475 LPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEVIGSGKV-----AGFRPITGRSQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAP 570          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 52/159 (32.70%), Postives = 80/159 (50.31%), Query Frame = 2
Query:   65 YPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDD-LVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            Y Y  DG+ IWSAI  +V   V  YYP+ + + DD+ELQ+W  E  + G    +  S  P+L++  + LV  +T +I+  SA+HAA++  Q+    ++PN PP M+        P  TS      + F+  LP+V      +  +  LS    D   LG
Sbjct:  472 YYYRDDGMQIWSAIRSFVSEIVDIYYPSDASVRDDQELQAWVGEIFSEGFLS-QESSGMPSLLDTQEALVQYVTMVIFTCSAKHAAVSASQFDSCVWMPNLPPSMQL-------PPPTSKGQASPEGFIATLPAVNATCDVIIALWLLSKEPGDRRPLG 622          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LX12B_HUMAN (Arachidonate 12-lipoxygenase, 12R type OS=Homo sapiens GN=ALOX12B PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 50/158 (31.65%), Postives = 75/158 (47.47%), Query Frame = 2
Query:   65 YPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            Y Y  D L +W+A+E +V   +++YYP+ + +  D ELQSW  E             +   L    +L+  +T +I+  SA+HAA+N GQ  +  ++PN P  MR      N P  T  L    + F+  LP V      + V+ TLS    D   LG
Sbjct:  496 YYYRDDSLAVWNALEKYVTEIITYYYPSDAAVEGDPELQSWVQEIFKECLLGRESSGFPRCLRTVPELIRYVTIVIYTCSAKHAAVNTGQMEFTAWMPNFPASMR------NPPIQTKGLT-TLETFMDTLPDVKTTCITLLVLWTLSREPDDRRPLG 646          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX5_HUMAN (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 40/109 (36.70%), Postives = 58/109 (53.21%), Query Frame = 2
Query:   65 YPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVP 391
            Y Y  DGLL+W AI  +    V  YY     + +D ELQ +  +    G    +   +  ++ + + L   LT +I+ ASAQHAA+NFGQY +  ++PN PP MR   P
Sbjct:  469 YFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPP 577          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 51/159 (32.08%), Postives = 75/159 (47.17%), Query Frame = 2
Query:   65 YPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLING-DDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            Y +  D L +W A+E +V   +++YYPN + +  D ELQ W  E         R  S +PT +    +L+  +T +++  SA+HAA+N GQ  Y  ++PN P  MR      N P  T  L     Y +  LP V      + V+ TL     D   LG
Sbjct:  496 YYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLG-RESSGFPTCLRTIPELIEYVTMVMYTCSARHAAVNSGQLEYTSWMPNFPSSMR------NPPMQTKGLTTLQTY-MDTLPDVKTTCIVLLVLWTLCREPDDRRPLG 646          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 49/159 (30.82%), Postives = 76/159 (47.80%), Query Frame = 2
Query:   65 YPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLING-DDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLG 538
            Y +  D L +W A+E +V   +++YYPN + +  D ELQ W  E       + R  S +PT +    +L+  +T +++  SA+HAA+N GQ  Y  ++PN P  MR       +P   S      + F+  LP V      + V+ TL     D   LG
Sbjct:  496 YYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLE-RESSGFPTCLRTVPELIEYVTMVMYTCSARHAAVNTGQLEYTSWMPNFPSSMR-------NPPMQSKGLTTLQTFMDTLPDVKTTCIVLLVLWTLCREPDDRRPLG 646          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX15_RABIT (Arachidonate 15-lipoxygenase OS=Oryctolagus cuniculus GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 45/167 (26.95%), Postives = 76/167 (45.51%), Query Frame = 2
Query:   56 IEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPW 556
            +E   YA D L +W  I  +V+  +  YY     + DD ELQSW  E    G    + + +  +L +       +T  I+  + QH++++ GQ  +  +VPN P  MR   P   D    + +A         LP++ Q++  M++V  L    P    LG+ Q+ +
Sbjct:  456 VESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIHLGQLDWFTWVPNAPCTMRLPPPTTKDATLETVMA--------TLPNLHQSSLQMSIVWQLGRDQPIMVPLGQHQEEY 614          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX12_RABIT (Arachidonate 12-lipoxygenase, 12S-type OS=Oryctolagus cuniculus GN=ALOX12 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 45/167 (26.95%), Postives = 76/167 (45.51%), Query Frame = 2
Query:   56 IEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPW 556
            +E   YA D L +W  I  +V+  +  YY     + DD ELQSW  E    G    + + +  +L +       +T  I+  + QH++++ GQ  +  +VPN P  MR   P   D    + +A         LP++ Q++  M++V  L    P    LG+ Q+ +
Sbjct:  456 VESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREITEIGLQGAQKQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIHLGQLDWFTWVPNAPCTMRLPPPTTKDATLETVMA--------TLPNLHQSSLQMSIVWQLGRDQPIMVPLGQHQEEY 614          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 47/162 (29.01%), Postives = 71/162 (43.83%), Query Frame = 2
Query:   71 YAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPW 556
            YA D L +W  I  +V   V  +Y     +  D ELQ+W  E    G    +   +  +  +   L   LT  ++  +AQHAA+N GQ  +  +VPN P  MR   P   +    + +       + +LP V QA   MA+   LS   PD   LG  ++ +
Sbjct:  460 YAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVGLCQAQDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQGQLDWYAWVPNAPCTMRMPPPTTKEDVTMATV-------MGSLPDVRQACLQMAISWHLSRRQPDMVPLGHHKEKY 614          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX12_BOVIN (Arachidonate 12-lipoxygenase, 12S-type OS=Bos taurus GN=ALOX12 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 44/162 (27.16%), Postives = 71/162 (43.83%), Query Frame = 2
Query:   71 YAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPW 556
            YA D L +W  +  +V   VS +Y     + DD ELQ+W  +    G    +   +  TL + D L   +T  I+  + QH++ + GQ  +  +VPN P  MR   P   D      +A         LP+  QA+  M++   L    P    LG+ ++ +
Sbjct:  461 YAQDALRLWEILSRYVEGIVSLHYKTDESVRDDIELQAWCRDITEIGLLGAQDRGFPVTLQSKDQLCHFVTMCIFTCTGQHSSTHLGQLDWYSWVPNAPCTMRLPPPTTKDVTLEKVMA--------TLPNFHQASLQMSITWQLGRRQPIMVALGQHEEEY 614          
The following BLAST results are available for this feature:
BLAST of CX290543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
LOX_PSEAE1.459e-1439.60Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
LX15B_RAT2.488e-1432.70Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LX12B_HUMAN1.235e-1331.65Arachidonate 12-lipoxygenase, 12R type OS=Homo sap... [more]
LOX5_HUMAN1.235e-1336.70Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
LX12B_MOUSE2.751e-1332.08Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]
LX12B_RAT4.693e-1330.82Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]
LOX15_RABIT1.156e-1126.95Arachidonate 15-lipoxygenase OS=Oryctolagus cunicu... [more]
LOX12_RABIT1.156e-1126.95Arachidonate 12-lipoxygenase, 12S-type OS=Oryctola... [more]
LOX12_HUMAN1.510e-1129.01Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LOX12_BOVIN1.510e-1127.16Arachidonate 12-lipoxygenase, 12S-type OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionC02025D01SK IF1 Citrus clementina cDNA clone C02025D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290543 ID=CX290543; Name=CX290543; organism=Citrus clementina; type=EST; length=657bp
ATTCGGCCGAGGATGGCAGTCCTGACCCACACAGCCACATGGTTTGAAGT
TGCTAATTGAGGACTACCCATACGCAGCAGACGGACTTCTAATTTGGTCA
GCAATTGAGGATTGGGTGCGCACTTATGTGAGCCATTACTACCCAAATTC
AAGCCAAATTTGTGACGACAAAGAGCTACAATCATGGTACGCTGAGTCCA
TCAACACAGGCCATGCCGATCTTCGCCACGAAAGCTGGTGGCCCACATTA
ATCAACGGTGATGATCTGGTGTCCATCCTAACTACGATCATCTGGCTCGC
ATCTGCACAGCACGCTGCACTCAATTTTGGACAGTACCCGTATGGTGGTT
ACGTGCCCAATCGCCCTCCCCTAATGAGAAGATTAGTACCCGACGAAAAT
GACCCCGAGTATACCAGTTTCTTAGCTGAACCACACAAGTATTTCCTGCT
GGCATTGCCAAGCGTACTACAAGCGACCAAATACATGGCCGTGGTAGACA
CATTGTCTACACATTCGCCGGACGAGGAGTACCTCGGGGAACGACAACAG
CCGTGGATTTGGTCCGGCGATGGTGAGATAACCGAGGCATTTTTTGAATT
TTCTGCGGAGAATAGACGGATAGAAAAAGAAATCGAGAAAAGAAACAGTG
ATCCAAG
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