CX290543

Overview
NameCX290543
Unique NameCX290543
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX15_PONAB (Arachidonate 15-lipoxygenase OS=Pongo abelii GN=ALOX15 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 44/162 (27.16%), Postives = 73/162 (45.06%), Query Frame = 2
Query:   71 YAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPW 556
            YA D L +W  I  +V   VS +Y     + DD ELQ+W  E    G    +   +  +L + D +   +T  I+  + QHA+++ GQ  +  +VPN P  MR   P   D    + +A         LP+  QA+  M++   L    P    +G+ ++ +
Sbjct:  460 YAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQSRDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAPCTMRLPPPTTKDATLETVMA--------TLPNFHQASLQMSITWQLGRRQPVMVAVGQHEEEY 613          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX12_PIG (Arachidonate 12-lipoxygenase, 12S-type OS=Sus scrofa GN=ALOX12 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 47/173 (27.17%), Postives = 78/173 (45.09%), Query Frame = 2
Query:   56 IEDYPYAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPWIWSGDG 574
            +E   YA D L +W  I  +V   VS +Y     + +D ELQ+W  E    G    +   +  +L + + L   +T  I+  + QH++ + GQ  +  +VPN P  MR   P   D    + +A         LP+  QA+  M++   L    P    LG+ ++ + +SG G
Sbjct:  456 VESSFYAQDALRLWEVISRYVEGIVSLHYKTDESVKEDFELQAWCREFTEIGLLGAQDRGFPVSLQSKEQLCHFVTMCIFTCTGQHSSNHLGQLDWYTWVPNAPCTMRLPPPTTKDATLETVMA--------TLPNFHQASLQMSITWQLGRCQPTMVALGQHEEEY-FSGPG 619          
BLAST of CX290543 vs. ExPASy Swiss-Prot
Match: LOX15_HUMAN (Arachidonate 15-lipoxygenase OS=Homo sapiens GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 44/162 (27.16%), Postives = 72/162 (44.44%), Query Frame = 2
Query:   71 YAADGLLIWSAIEDWVRTYVSHYYPNSSQICDDKELQSWYAESINTGHADLRHESWWPTLINGDDLVSILTTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLVPDENDPEYTSFLAEPHKYFLLALPSVLQATKYMAVVDTLSTHSPDEEYLGERQQPW 556
            YA D L +W  I  +V   VS +Y     + DD ELQ+W  E    G    +   +  +L   D +   +T  I+  + QHA+++ GQ  +  +VPN P  MR   P   D    + +A         LP+  QA+  M++   L    P    +G+ ++ +
Sbjct:  460 YAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIGLQGAQDRGFPVSLQARDQVCHFVTMCIFTCTGQHASVHLGQLDWYSWVPNAPCTMRLPPPTTKDATLETVMA--------TLPNFHQASLQMSITWQLGRRQPVMVAVGQHEEEY 613          
The following BLAST results are available for this feature:
BLAST of CX290543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
LOX15_PONAB1.972e-1127.16Arachidonate 15-lipoxygenase OS=Pongo abelii GN=AL... [more]
LOX12_PIG3.363e-1127.17Arachidonate 12-lipoxygenase, 12S-type OS=Sus scro... [more]
LOX15_HUMAN4.392e-1127.16Arachidonate 15-lipoxygenase OS=Homo sapiens GN=AL... [more]

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Properties
Property NameValue
Genbank descriptionC02025D01SK IF1 Citrus clementina cDNA clone C02025D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290543 ID=CX290543; Name=CX290543; organism=Citrus clementina; type=EST; length=657bp
ATTCGGCCGAGGATGGCAGTCCTGACCCACACAGCCACATGGTTTGAAGT
TGCTAATTGAGGACTACCCATACGCAGCAGACGGACTTCTAATTTGGTCA
GCAATTGAGGATTGGGTGCGCACTTATGTGAGCCATTACTACCCAAATTC
AAGCCAAATTTGTGACGACAAAGAGCTACAATCATGGTACGCTGAGTCCA
TCAACACAGGCCATGCCGATCTTCGCCACGAAAGCTGGTGGCCCACATTA
ATCAACGGTGATGATCTGGTGTCCATCCTAACTACGATCATCTGGCTCGC
ATCTGCACAGCACGCTGCACTCAATTTTGGACAGTACCCGTATGGTGGTT
ACGTGCCCAATCGCCCTCCCCTAATGAGAAGATTAGTACCCGACGAAAAT
GACCCCGAGTATACCAGTTTCTTAGCTGAACCACACAAGTATTTCCTGCT
GGCATTGCCAAGCGTACTACAAGCGACCAAATACATGGCCGTGGTAGACA
CATTGTCTACACATTCGCCGGACGAGGAGTACCTCGGGGAACGACAACAG
CCGTGGATTTGGTCCGGCGATGGTGAGATAACCGAGGCATTTTTTGAATT
TTCTGCGGAGAATAGACGGATAGAAAAAGAAATCGAGAAAAGAAACAGTG
ATCCAAG
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