CX290548

Overview
NameCX290548
Unique NameCX290548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: YP011_YEAST (Uncharacterized mitochondrial carrier YPR011C OS=Saccharomyces cerevisiae GN=YPR011C PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 53/208 (25.48%), Postives = 96/208 (46.15%), Query Frame = 3
Query:   39 QNISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV--------------SHDVYPSLSIAISKIYK-EGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEM--LALGALAGFTASTISFP 611
            + I  S  +V  ++G +GL+ GNG+N +RI P  A++   +E  K+ +        QE+    Q                          S +A +PL+++K RL++              S    P +   +S+ Y+ EGG+   Y G+ PT +G++PY    + +YE L++   NS + +   +  +  L +GA++G  A TI++P
Sbjct:   61 RGIFSSIRQVYHEEGTKGLFRGNGLNCIRIFPYSAVQFVVYEACKKKLFHVNGNNGQEQLTNTQ---------------RLFSGALCGGCSVVATYPLDLIKTRLSIQTANLSSLNRSKAKSISKPPGIWQLLSETYRLEGGLRGLYRGVWPTSLGVVPYVALNFAVYEQLREFGVNSSDAQPSWKSNLYKLTIGAISGGVAQTITYP 253          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 55/192 (28.65%), Postives = 91/192 (47.40%), Query Frame = 3
Query:   45 ISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCN--SKNKRSLNRPEMLALGALAGFTASTISFP 611
            I G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK R+ +     Y  +     +I  + G+ AFY G  P ++G++PY+     +YETLK  +    + N        +LA G ++       S+P
Sbjct:  226 IVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHE--RLVAGSLAGAIAQSSI------------------YPMEVLKTRMALRKTGQYSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYP 397          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 54/187 (28.88%), Postives = 90/187 (48.13%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTAST 599
            NI     +++++ G + LW GNG+N+++I P  A++   +E  K+  T+   K    E  +   G L+ + + + I                  +P+EVLK RL V     Y  +     KI ++ GI AFY G  P ++G++PY+     +YETLK  +  +  K S N   ++ LG   G  +ST
Sbjct:  232 NIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAE--RFVAGSLAGATAQTSI------------------YPMEVLKTRLAVGRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNHAKDSANPGVLVLLG--CGTASST 396          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: S2542_XENLA (Solute carrier family 25 member 42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 47/180 (26.11%), Postives = 87/180 (48.33%), Query Frame = 3
Query:   81 GWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTT--AQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFP 611
            G+  LW GN   M+R+IP  AI+    E  K+ + +    +  +    P++  G L+                     +TL  +PL++++ R+ V+  ++Y ++     ++ +E G+ + Y G +PT++G++PY+   +F YETLKK +     +      E L  GA AG    + S+P
Sbjct:   88 GFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALA------------------GTTATLLTYPLDLVRARMAVTQKEMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYTFERLLFGACAGLFGQSSSYP 249          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC3_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Homo sapiens GN=SLC25A23 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 57/193 (29.53%), Postives = 91/193 (47.15%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRP--EMLALGALAGFTASTISFP 611
            NI G    ++ + G + LW GNGIN+L+I P  AI+   +E +KRA+   QE    +E  +   G L+ + + + I                  +P+EVLK RLT+     Y  L     +I +  G  AFY G  P ++G++PY+     +YETLK  +    +  S +     +LA G ++       S+P
Sbjct:  224 NILGGLRSMVLEGGIRSLWRGNGINVLKIAPESAIKFMAYEQIKRAILGQQETLHVQE--RFVAGSLAGATAQTII------------------YPMEVLKTRLTLRRTGQYKGLLDCARRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNWWLQQYSHDSADPGILVLLACGTISSTCGQIASYP 396          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 55/193 (28.50%), Postives = 90/193 (46.63%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRP--EMLALGALAGFTASTISFP 611
            +I G F  +I + G++ LW GNGIN+++I P  AI+   +E +KR + + QE     E  +   G L+   + S I                  +P+EVLK R+ +     Y  +     KI  + G+ AFY G  P ++G++PY+     +YETLK  +       S +     +LA G ++       S+P
Sbjct:  270 SILGGFTHMIREGGFRSLWRGNGINVIKIAPESAIKFMAYEQIKRIIGSNQETLGIHE--RFVAGSLAGVIAQSSI------------------YPMEVLKTRMALRKTGQYQGVLDCGKKILLQEGLSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTVSSTCGQLASYP 442          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 53/186 (28.49%), Postives = 88/186 (47.31%), Query Frame = 3
Query:   63 EVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRP--EMLALGALAGFTASTISFP 611
            ++I++ G + LW GNGIN+++I P  A++   +E +KR M ++QE     E  +   G L+   + S I                  +P+EVLK RL +     Y  +S     I K  G+ AFY G  P ++G++PY+     +YETLK  +       + +     +LA G ++       S+P
Sbjct:  232 QMIKEGGVRSLWRGNGINVIKIAPETALKFMAYEQIKRVMGSSQETLGISE--RFVAGSLAGVIAQSTI------------------YPMEVLKTRLALRKTGQYKGISDCAKHILKTEGMSAFYKGYVPNMLGIIPYAGIDLAVYETLKNTWLQRYGTENADPGVFVLLACGTVSSTCGQLASYP 397          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 46/181 (25.41%), Postives = 88/181 (48.62%), Query Frame = 3
Query:   78 QGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTT--AQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFP 611
            +G+  LW GN   M+R+IP  AI+    E  K+ + +    +  +    P++  G L+                     +T+  +PL++++ R+ V+  ++Y ++     ++ +E G+ + Y G +PT++G++PY+   +F YETLKK +     +      E L  GA AG    + S+P
Sbjct:   87 EGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALA------------------GTTATIITYPLDLVRARMAVTPKEMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYPFERLLFGACAGLFGQSASYP 249          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 49/178 (27.53%), Postives = 90/178 (50.56%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALG 572
            ++   F ++I++ G   LW GNG+N+++I P  AI+   +E  K+ ++        ++  KVQ     ++ SL+  +            +  A +P+EV+K RLT+     Y  +     KI ++ G+ AFY G  P ++G++PY+     +YETLK  + +   K + N   ++ LG
Sbjct:  234 SLVNGFKQMIKEGGVASLWRGNGVNVIKIAPETAIKFMAYEQYKKLLS--------KDGGKVQSHERFMAGSLAGAT------------AQTAIYPMEVMKTRLTLRKTGQYSGMFDCAKKILRKEGVKAFYKGYVPNILGIIPYAGIDLAVYETLKNTWLSHYAKDTANPGVLVLLG 391          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC2_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus tropicalis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 54/190 (28.42%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   51 GSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRP--EMLALGALAGFTASTISFP 611
            G F ++I + G + LW GNGIN+++I P  AI+   +E +KR + + QE     E  ++  G L+   + S I                  +P+EVLK R+ +     Y  +     KI  + G+ AFY G  P ++G++PY+     +YETLK  +       S +     +LA G ++       S+P
Sbjct:  272 GGFTQMIREGGIRSLWRGNGINVIKIAPESAIKFMAYEQMKRIIGSDQETLGIHE--RLVAGSLAGVIAQSSI------------------YPMEVLKTRMALRKTGQYQGMLDCGKKILLKEGVSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTISSTCGQLASYP 441          
The following BLAST results are available for this feature:
BLAST of CX290548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
YP011_YEAST8.241e-1425.48Uncharacterized mitochondrial carrier YPR011C OS=S... [more]
SCMC2_MOUSE8.241e-1428.65Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA1.836e-1328.88Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENLA1.836e-1326.11Solute carrier family 25 member 42 OS=Xenopus laev... [more]
SCMC3_HUMAN2.398e-1329.53Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENLA2.398e-1328.50Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2A_DANRE2.398e-1328.49Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENTR2.398e-1325.41Solute carrier family 25 member 42 OS=Xenopus trop... [more]
SCMC1_DANRE4.090e-1327.53Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_XENTR5.342e-1328.42Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionC02025D06SK IF1 Citrus clementina cDNA clone C02025D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290548 ID=CX290548; Name=CX290548; organism=Citrus clementina; type=EST; length=611bp
GATTCGGCCGAGGCGAGAATGGTGGTTGGTGTTGGATCCAAAATATTTCT
GGTAGTTTCATTGAAGTAATTGAGCAGCAGGGTTGGCAAGGACTATGGGC
TGGCAATGGAATTAATATGCTCCGAATAATCCCCACCCAGGCAATTGAGC
TTGGAACATTTGAGTGTGTCAAACGAGCTATGACTACGGCACAAGAGAAA
TGGAGTCAGGAGGAATGCCCAAAAGTGCAAATTGGTCCTCTCAGTTTGAG
TTTTTCTCTCTCCTGGATTTCTCCTGTTGCCGTGGCTGGTGCAGCTGCTG
GAGTTGTTAGCACGCTTGCGTGCCATCCTCTTGAAGTATTGAAGGATCGG
TTGACTGTAAGTCATGATGTGTACCCTAGTTTGAGCATTGCAATTAGCAA
AATATATAAGGAGGGTGGAATTGGTGCTTTTTATGCCGGTATTTCACCTA
CGTTGATTGGCATGCTCCCGTATAGTACTTGTTACTACTTTATGTATGAG
ACATTGAAAAAGAAATACTGCAATTCAAAGAATAAGAGGTCGCTAAACCG
TCCGGAGATGCTTGCATTGGGAGCTCTTGCAGGTTTTACAGCTAGCACCA
TCAGCTTTCCC
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