CX290548

Overview
NameCX290548
Unique NameCX290548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13169 contig Ccv1_Contig13169:289..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 54/187 (28.88%), Postives = 90/187 (48.13%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTAST 599
            NI     +++++ G + LW GNG+N+++I P  A++   +E  K+  T+   K    E  +   G L+ + + + I                  +P+EVLK RL V     Y  +     KI ++ GI AFY G  P ++G++PY+     +YETLK  +  +  K S N   ++ LG   G  +ST
Sbjct:  232 NIITGLKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAE--RFIAGSLAGATAQTSI------------------YPMEVLKTRLAVGKTGQYSGMFDCAKKIMQKEGILAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNYAKDSANPGVLVLLG--CGTVSST 396          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: S2542_DANRE (Solute carrier family 25 member 42 OS=Danio rerio GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 49/180 (27.22%), Postives = 87/180 (48.33%), Query Frame = 3
Query:   75 QQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFP 611
            + G+  LW GN   M+R+IP  AI+    E  K  +      +  +  P V   P  L+ SL+  +            + +  +PL++++ R+ V+  ++Y ++     +I +E G+   Y G +PT++G++PY+   +F YETLKK +     +      E L  GA AG    + S+P
Sbjct:   85 KDGFFSLWRGNSATMVRVIPYAAIQFCAHEQYK-GILGKYYGFQGKALPPV---PRLLAGSLAGTT------------AAIITYPLDMVRARMAVTPKEMYSNIMDVFVRISREEGLKTLYRGFTPTILGVVPYAGLSFFTYETLKKTHAEKTGRAHPFPYERLVFGACAGLIGQSASYP 248          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: GDC_RAT (Graves disease carrier protein (Fragment) OS=Rattus norvegicus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 58/198 (29.29%), Postives = 93/198 (46.97%), Query Frame = 3
Query:   66 VIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS---HDVYPSLSIAISKIY-KEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKK---KYCNS-KNKRSLNRPEMLAL--------GALAGFTASTISFP 611
            V +++G+ GL+ GNG  M+RI P  AI+   FE  K  +TT  +        ++  G ++   S++               + +  +PL+V++ RL         Y  +  A   IY KEGG   FY G+ PT++GM PY++  +F + TLK     Y  +   + S + P +L L        G +A   A TIS+P
Sbjct:   83 VPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITT--KLGVSGHVHRLMAGSMAGKMSMT---------------AVICTYPLDVVRVRLAFQVKGEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYASVSFFTFGTLKSVGLSYAPTLLGRPSSDNPNVLVLKTHINLLCGGVARAIAQTISYP 263          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: S2542_HUMAN (Solute carrier family 25 member 42 OS=Homo sapiens GN=SLC25A42 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.651e-12
Identity = 48/186 (25.81%), Postives = 86/186 (46.24%), Query Frame = 3
Query:   78 QGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTT-------AQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFP 611
            +G+  LW GN   M+R++P  AI+    E  KR + +       A   W     P++  G L+ + + S                    +PL++++ R+ V+  ++Y ++     +I +E G+   Y G  PT++G++PY+   +F YETLK  +     +R     E +  GA AG    + S+P
Sbjct:   84 EGFLSLWRGNSATMVRVVPYAAIQFSAHEEYKRILGSYYGFRGEALPPW-----PRLFAGALAGTTAAS------------------LTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYETLKSLHREYSGRRQPYPFERMIFGACAGLIGQSASYP 246          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: GDC_MOUSE (Graves disease carrier protein homolog OS=Mus musculus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 58/198 (29.29%), Postives = 90/198 (45.45%), Query Frame = 3
Query:   66 VIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS---HDVYPSLSIAISKIY-KEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKK---KYCNS-KNKRSLNRPEMLAL--------GALAGFTASTISFP 611
            V +++G+ GL+ GNG  M+RI P  AI+   FE  K  +TT  +        ++  G ++                     + +  +PL+V++ RL         Y  +  A   IY KEGG   FY G+ PT++GM PY+   +F + TLK     Y  +   + S + P +L L        G +AG  A TIS+P
Sbjct:   83 VPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITT--KLGVSGHVHRLMAGSMA------------------GMTAVICTYPLDVVRVRLAFQVKGEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSYAPALLGRPSSDNPNVLVLKTHINLLCGGVAGAIAQTISYP 260          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 52/187 (27.81%), Postives = 88/187 (47.06%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTAST 599
            NI     +++++ G + LW GNG+N+++I P  A++   +E  K+  T+   K    E  +   G L+ + + + I                  +P+EVLK RL V     Y  +     KI +  G+ AFY G  P ++G++PY+     +YETLK  +  +    S N   ++ LG   G  +ST
Sbjct:  232 NIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAE--RFIAGSLAGATAQTSI------------------YPMEVLKTRLAVGKTGQYSGMFDCAKKIMQREGVRAFYKGYIPNILGIIPYAGIDLAIYETLKTFWLQNYATDSANPGVLVLLG--CGTASST 396          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: GDC_BOVIN (Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 57/198 (28.79%), Postives = 90/198 (45.45%), Query Frame = 3
Query:   66 VIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS---HDVYPSLSIAISKIY-KEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKK---KYCNS-KNKRSLNRPEMLAL--------GALAGFTASTISFP 611
            V +++G+ GL+ GNG  M+RI P  AI+   FE  K  +TT  +        ++  G ++                     + +  +PL++++ RL         Y  +  A   IY KEGG   FY G+ PT++GM PY+   +F + TLK     Y  +   + S + P +L L        G +AG  A TIS+P
Sbjct:   81 VPKKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITT--KLGVSGHVHRLMAGSMA------------------GMTAVICTYPLDMVRVRLAFQVKGEHTYTGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSYAPTLLGRPSSDNPNVLVLKTHINLLCGGVAGAIAQTISYP 258          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 56/198 (28.28%), Postives = 85/198 (42.93%), Query Frame = 3
Query:   66 VIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS---HDVYPSLSIAISKIY-KEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSK----NKRSLNRPEMLAL--------GALAGFTASTISFP 611
            V +++G+ GL+ GNG  M+RI P  AI+   FE  K  +TT                       +S               + +  +PL++++ RL         Y  +  A   IY KEGG   FY G+ PT++GM PY+   +F + TLK    +       + S + P +L L        G +AG  A TIS+P
Sbjct:   83 VPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITT--------------------KLGISGHVHRLMAGSMAGMTAVICTYPLDMVRVRLAFQVKGEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYP 260          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: S2541_HUMAN (Solute carrier family 25 member 41 OS=Homo sapiens GN=SLC25A41 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 54/187 (28.88%), Postives = 88/187 (47.06%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTAST 599
            N+ G    ++++ G++ LW GNGIN+L+I P  AI+   FE  K      Q     +E  ++  G L+++ S + I                  +P+EVLK RLT+     Y  L     +I +  G  A Y G  P ++G++PY+     +YE L+  +   K+ R +  P    L +L+  T ST
Sbjct:  131 NLLGGLQSMVQEGGFRSLWRGNGINVLKIAPEYAIKFSVFEQCKNYFCGIQGSPPFQE--RLLAGSLAVAISQTLI------------------NPMEVLKTRLTLRRTGQYKGLLDCARQILQREGTRALYRGYLPNMLGIIPYACTDLAVYEMLQCFWV--KSGRDMGDPS--GLVSLSSVTLST 293          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: S2541_BOVIN (Solute carrier family 25 member 41 OS=Bos taurus GN=SLC25A41 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 55/187 (29.41%), Postives = 87/187 (46.52%), Query Frame = 3
Query:   42 NISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTAST 599
            N+ G    +I++ G + LW GNGIN+L+I P  AI+   FE  K       E    +E  ++  G L+++ S + I                  +P+EVLK RLT+     Y  L     +I ++ G  A Y G  P ++G++PY+     +YE L   +   K+ R +  P    L +L+  T ST
Sbjct:  129 NLLGGLRSLIQEGGIRSLWRGNGINVLKIAPEYAIKFSVFEQCKNYFCGVHESPPFQE--RLLAGSLAVATSQTLI------------------NPMEVLKTRLTLRRTGQYKGLLDCARQILEQEGTRALYRGYLPNMLGIIPYACTDLAVYEMLNCLWL--KSGRDMKDPS--GLVSLSSVTLST 291          
The following BLAST results are available for this feature:
BLAST of CX290548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SCM1A_XENLA6.976e-1328.88Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_DANRE6.976e-1327.22Solute carrier family 25 member 42 OS=Danio rerio ... [more]
GDC_RAT1.554e-1229.29Graves disease carrier protein (Fragment) OS=Rattu... [more]
S2542_HUMAN2.651e-1225.81Solute carrier family 25 member 42 OS=Homo sapiens... [more]
GDC_MOUSE4.522e-1229.29Graves disease carrier protein homolog OS=Mus musc... [more]
SCMC1_XENTR5.906e-1227.81Calcium-binding mitochondrial carrier protein SCaM... [more]
GDC_BOVIN1.007e-1128.79Graves disease carrier protein OS=Bos taurus GN=SL... [more]
GDC_HUMAN1.316e-1128.28Graves disease carrier protein OS=Homo sapiens GN=... [more]
S2541_HUMAN1.718e-1128.88Solute carrier family 25 member 41 OS=Homo sapiens... [more]
S2541_BOVIN1.718e-1129.41Solute carrier family 25 member 41 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionC02025D06SK IF1 Citrus clementina cDNA clone C02025D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290548 ID=CX290548; Name=CX290548; organism=Citrus clementina; type=EST; length=611bp
GATTCGGCCGAGGCGAGAATGGTGGTTGGTGTTGGATCCAAAATATTTCT
GGTAGTTTCATTGAAGTAATTGAGCAGCAGGGTTGGCAAGGACTATGGGC
TGGCAATGGAATTAATATGCTCCGAATAATCCCCACCCAGGCAATTGAGC
TTGGAACATTTGAGTGTGTCAAACGAGCTATGACTACGGCACAAGAGAAA
TGGAGTCAGGAGGAATGCCCAAAAGTGCAAATTGGTCCTCTCAGTTTGAG
TTTTTCTCTCTCCTGGATTTCTCCTGTTGCCGTGGCTGGTGCAGCTGCTG
GAGTTGTTAGCACGCTTGCGTGCCATCCTCTTGAAGTATTGAAGGATCGG
TTGACTGTAAGTCATGATGTGTACCCTAGTTTGAGCATTGCAATTAGCAA
AATATATAAGGAGGGTGGAATTGGTGCTTTTTATGCCGGTATTTCACCTA
CGTTGATTGGCATGCTCCCGTATAGTACTTGTTACTACTTTATGTATGAG
ACATTGAAAAAGAAATACTGCAATTCAAAGAATAAGAGGTCGCTAAACCG
TCCGGAGATGCTTGCATTGGGAGCTCTTGCAGGTTTTACAGCTAGCACCA
TCAGCTTTCCC
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