CX290548

Overview
NameCX290548
Unique NameCX290548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: YBT5_SCHPO (Uncharacterized mitochondrial carrier C12D12.05c OS=Schizosaccharomyces pombe GN=SPBC12D12.05c PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 52/193 (26.94%), Postives = 88/193 (45.60%), Query Frame = 3
Query:   75 QQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS------HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPE--------MLALGALAGFTASTISFP 611
            + G +  + GNGIN+L+++P  +I+ GT+E +KR +  +    +         G ++ S +  +I                  +P++ LK R+  S      H     LS A  ++YK  GI  +Y G+   ++GM PYS      +E LK+ +      R    P+        ++A GAL+G T +TI FP
Sbjct:  182 RNGIRSFFVGNGINVLKVMPESSIKFGTYEAMKRVLGISSSSENHSPLYSYLAGGMAGSVAQMFI------------------YPVDTLKFRIQCSDLSRGQHGKSIILSNA-KELYKSVGIRGYYRGVLVGILGMFPYSATDLGTFEGLKRTWIGILASRDNVDPQDVKLPNGLVMAFGALSGSTGATIVFP 355          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: S2542_RAT (Solute carrier family 25 member 42 OS=Rattus norvegicus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 47/186 (25.27%), Postives = 85/186 (45.70%), Query Frame = 3
Query:   78 QGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAM-------TTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFP 611
            +G+  LW GN   M+R+IP  AI+    E  KR +         A   W     P++  G L+ + + S                    +PL++++ R+ V+  ++Y ++     +I +E G+   Y G +PT++G++PY+   +F YE+LK  +     +      E +  GA AG    + S+P
Sbjct:   84 EGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPW-----PRLLAGALAGTTAAS------------------LTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLHREYSGRPQPYPFERMVFGACAGLIGQSASYP 246          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: S2542_MOUSE (Solute carrier family 25 member 42 OS=Mus musculus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 47/186 (25.27%), Postives = 85/186 (45.70%), Query Frame = 3
Query:   78 QGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAM-------TTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFP 611
            +G+  LW GN   M+R+IP  AI+    E  KR +         A   W     P++  G L+ + + S                    +PL++++ R+ V+  ++Y ++     +I +E G+   Y G +PT++G++PY+   +F YE+LK  +     +      E +  GA AG    + S+P
Sbjct:   84 EGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPW-----PRLLAGALAGTTAAS------------------LTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLHREYSGRPQPYPFERMVFGACAGLIGQSASYP 246          
BLAST of CX290548 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 45/180 (25.00%), Postives = 83/180 (46.11%), Query Frame = 3
Query:   78 QGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS--HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFP 611
            +G+ G + GNG N++RI P  AI+  ++E  K  +    ++        + +G  +   SL                  L  +PL++++ RLTV    + Y  ++     I +E G+   Y G+  + +G+ PY    +  YE LKK +       ++   + L  GA++G TA T+++P
Sbjct:  196 EGFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFLLNNNDQTHLTTYENLFVGGAAGVTSL------------------LCTYPLDLIRSRLTVQVFGNKYNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTV--VQSLTFGAISGATAQTLTYP 355          
The following BLAST results are available for this feature:
BLAST of CX290548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
YBT5_SCHPO2.244e-1126.94Uncharacterized mitochondrial carrier C12D12.05c O... [more]
S2542_RAT2.244e-1125.27Solute carrier family 25 member 42 OS=Rattus norve... [more]
S2542_MOUSE2.244e-1125.27Solute carrier family 25 member 42 OS=Mus musculus... [more]
MCFB_DICDI6.530e-1125.00Mitochondrial substrate carrier family protein B O... [more]

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Properties
Property NameValue
Genbank descriptionC02025D06SK IF1 Citrus clementina cDNA clone C02025D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290548 ID=CX290548; Name=CX290548; organism=Citrus clementina; type=EST; length=611bp
GATTCGGCCGAGGCGAGAATGGTGGTTGGTGTTGGATCCAAAATATTTCT
GGTAGTTTCATTGAAGTAATTGAGCAGCAGGGTTGGCAAGGACTATGGGC
TGGCAATGGAATTAATATGCTCCGAATAATCCCCACCCAGGCAATTGAGC
TTGGAACATTTGAGTGTGTCAAACGAGCTATGACTACGGCACAAGAGAAA
TGGAGTCAGGAGGAATGCCCAAAAGTGCAAATTGGTCCTCTCAGTTTGAG
TTTTTCTCTCTCCTGGATTTCTCCTGTTGCCGTGGCTGGTGCAGCTGCTG
GAGTTGTTAGCACGCTTGCGTGCCATCCTCTTGAAGTATTGAAGGATCGG
TTGACTGTAAGTCATGATGTGTACCCTAGTTTGAGCATTGCAATTAGCAA
AATATATAAGGAGGGTGGAATTGGTGCTTTTTATGCCGGTATTTCACCTA
CGTTGATTGGCATGCTCCCGTATAGTACTTGTTACTACTTTATGTATGAG
ACATTGAAAAAGAAATACTGCAATTCAAAGAATAAGAGGTCGCTAAACCG
TCCGGAGATGCTTGCATTGGGAGCTCTTGCAGGTTTTACAGCTAGCACCA
TCAGCTTTCCC
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