CX290552

Overview
NameCX290552
Unique NameCX290552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 64/185 (34.59%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTT------------LGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVET-VGNIPT 625
            ++NNVS  LP         + L  A   NG P  F+ ++   KPPV  + T             G+ +Y L   + V V+LQ+ N +    SE HP HLHG+DF+++G G G F  K+D             T  +   GW  +RFVADNPG W  HCH++   HI  G+ +A  V+  VG + T
Sbjct:  384 SMNNVSFVLPSN-------FSLLQAHS-NGIPGVFTTDFP-SKPPVKFDYTGNNISRALFQPVKGTKLYKLKYGSRVQVVLQDTNIVT---SENHPIHLHGYDFYIVGEGFGNFNPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWLMHCHLD--VHIKWGLAMAFLVDNGVGELET 554          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC11_ARATH (Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGM 577
            +INN++  +P T  L +    +   F  +    PP+ F+  Y  +    N  T+ G+ +  +  NTT++++LQ+ N +     E+HP+HLHG++F+V+G G G F  K+D             T  +   GW A+RF ADNPG W  HCH+E H   G+
Sbjct:  378 SINNITFIMPKTALLKAHYSNISGVFRTDFPDRPPKAFN--YTGVPLTANLGTSTGTRLSRVKFNTTIELVLQDTNLLTV---ESHPFHLHGYNFFVVGTGVGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFRADNPGVWFMHCHLEVHTMWGL 531          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC14_ARATH (Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.486e-19
Identity = 57/162 (35.19%), Postives = 81/162 (50.00%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 586
            +INN+S   P    L +    +   F ++    PP  F+   + +  P    T  G+ V +L  N++V++ILQ       N+   HP HLHG++F+V+G G G F +  +            T V  P  GWTA+RFVA+NPG W  HCHIE H   GM  V
Sbjct:  392 SINNISFVNPSVDILRAYYRHIGGVFQEDFPRNPPTKFNYTGENLPFP----TRFGTKVVVLDYNSSVELILQGTTVWASNI---HPIHLHGYNFYVVGSGFGNFDRRKDPLRYNLVDPPEETTVGVPRNGWTAVRFVANNPGVWLLHCHIERHATWGMNTV 546          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC10_ORYSJ (Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC10 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.486e-19
Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGLK-DAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 577
            +INNVS ++P T  L +   G     +  + P            PP N N + G+ V +L  N +V+V+LQ+ + +    +E+HP HLHG DF+V+G+G G +                   V  P G W A+RF ADNPG W  HCH+E H   G+
Sbjct:  399 SINNVSFDMPTTALLQAHYTGQSAGVYTADFPASPLEPFNYTGTPPNNTNVSNGTRVVVLPYNASVEVVLQDTSILG---AESHPLHLHGFDFFVVGQGTGNYDPSKHPAEFNLVDPVQRNTVGVPAGGWVAIRFFADNPGVWFMHCHLEVHTTWGL 552          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC2_ARATH (Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18
Identity = 67/188 (35.64%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  104 TKWA--INNVSLNLP-PTPYLGSIKYGL-KDAFDQNGP-----PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPTRRWL 637
            TK+A  INNVS  LP  T  L S   G  K+ F  + P     P N++       PP N   + G+ V +L   TTV+++LQ  + +     E HP HLHG +F+V+G+G G F    +              +  P G W A+RF+ADNPG W  HCHIE   H+  G+ +A  V   G++P ++ L
Sbjct:  388 TKFAASINNVSFILPNKTSLLQSYFVGKSKNVFMTDFPTAPIIPFNYTGT-----PPNNTMVSRGTKVVVLKYKTTVELVLQGTSILG---IEAHPIHLHGFNFYVVGQGFGNFNPARDPKHYNLVDPVERNTINIPSGGWVAIRFLADNPGVWLMHCHIE--IHLSWGLTMA-WVVLDGDLPNQKLL 564          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC13_ARATH (Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.605e-18
Identity = 57/170 (33.53%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNAN-----------TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKE-DEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 586
            +INNVS   P        +  +  A+ Q  P   F+ ++    PPV  +            T G+  Y L  N+ V +ILQ+ + +    +E HP HLHG++F+V+G G G F    D             T    P GW A+RFVA+NPGAW  HCHI+ H   G+ +V
Sbjct:  388 SINNVSFVFPK-------QNSIMQAYYQGTPTGVFTTDFPPT-PPVTFDYTGNVSRGLWQPTRGTKAYKLKFNSQVQIILQDTSIVT---TENHPMHLHGYEFYVVGTGVGNFNPNTDTSSFNLIDPPRRNTIGTPPGGWVAIRFVANNPGAWLMHCHIDSHIFWGLAMV 546          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC5_ARATH (Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.031e-18
Identity = 58/177 (32.77%), Postives = 84/177 (47.46%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTT------------LGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 604
            ++NNVS  LP         Y L  A   +G P  F+ ++   KPPV  + T             G+ +Y L   + V ++LQ+   + P   E HP HLHG+DF+++  G G F  K+D             T  +   GW  +RF+ADNPG W  HCH++   HI  G+ +A  VE
Sbjct:  399 SMNNVSFALPSN-------YSLLQAH-HHGIPGVFTTDFPA-KPPVKFDYTGNNISRSLYQPDRGTKLYKLKYGSRVQIVLQDTGIVTP---ENHPIHLHGYDFYIIAEGFGNFNPKKDTAKFNLEDPPLRNTVGVPVNGWAVIRFIADNPGVWIMHCHLDA--HISWGLAMAFLVE 561          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC4_ORYSJ (Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.031e-18
Identity = 53/157 (33.76%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGLKDA-FDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 577
            ++NNVS  LP    L S   GL    +  + P    S       PP N N   G+ + +L  NT+V++++Q+ + +     E+HP HLHG +F+V+G+G G +   ++              V  P G W A+RF+ADNPG W  HCH+E H   G+
Sbjct:  400 SMNNVSFVLPARALLQSHFTGLSSGVYAPDFPVAPLSPFNYTGTPPNNTNVKTGTKLLVLRYNTSVELVMQDTSILG---IESHPLHLHGFNFFVIGQGFGNYDAVNDPAKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGL 553          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC14_ORYSJ (Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC14 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.031e-18
Identity = 58/175 (33.14%), Postives = 83/175 (47.43%), Query Frame = 2
Query:   86 NTINGFTKWAINNVSLNLPPTPYL----GSIKYGLKDAFDQNGPPE--NFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF---TKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 583
            N   G    ++NNVS  LP T  L     S   G+      + PP   +F+N   V +      T+ G+ V  L  N TV+V+LQN   +    +E HP HLHG +F+VL +G G +    ++ +            T  + P GW  +RF ADNPG W  HCH+E H   G+ +
Sbjct:  388 NRTRGSLAASMNNVSFQLPATMSLLEASRSRSSGVYTRDFPDRPPVMFDFTNAAAVNRNMSLMVTSKGTRVKALRYNETVEVVLQNTAVLG---TENHPLHLHGFNFYVLAQGTGNYYYLIRKKKIRKNLVNPQQRNTIAVPPGGWAVIRFTADNPGVWLMHCHLEAHLPFGLAM 559          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC12_ORYSJ (Laccase-12/13 OS=Oryza sativa subsp. japonica GN=LAC12 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.031e-18
Identity = 57/162 (35.19%), Postives = 81/162 (50.00%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGL-KDAFDQNGP-----PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 577
            +INNVS  LP T  L S   G  K  +  N P     P N++       PP N N   G+ V +L     V++++Q+ + +    +E+HP HLHG +F+V+G+G G F   ++              V  P G W A+RF ADNPG W  HCH+E H   G+
Sbjct:  395 SINNVSFVLPATALLQSHFAGKSKGVYASNFPYYPLNPFNYTGT-----PPNNTNVMNGTKVLVLPYGANVELVMQDTSILG---AESHPLHLHGFNFFVVGQGFGNFDPINDPAKFNLYDPVERNTVGVPAGGWVAIRFHADNPGVWFMHCHLEVHMSWGL 548          
The following BLAST results are available for this feature:
BLAST of CX290552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LAC12_ARATH4.258e-1934.59Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC11_ARATH7.263e-1933.33Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 S... [more]
LAC14_ARATH9.486e-1935.19Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 S... [more]
LAC10_ORYSJ9.486e-1934.39Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC2_ARATH2.760e-1835.64Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=... [more]
LAC13_ARATH3.605e-1833.53Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 S... [more]
LAC5_ARATH8.031e-1832.77Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=... [more]
LAC4_ORYSJ8.031e-1833.76Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 ... [more]
LAC14_ORYSJ8.031e-1833.14Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC12_ORYSJ8.031e-1835.19Laccase-12/13 OS=Oryza sativa subsp. japonica GN=L... [more]

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Properties
Property NameValue
Genbank descriptionC02025D10SK IF1 Citrus clementina cDNA clone C02025D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290552 ID=CX290552; Name=CX290552; organism=Citrus clementina; type=EST; length=647bp
CATTCTCCACAAAATATTTGCCCTAATGGGATCCCCCAAGCCTCCCACAA
ATTTCCACCGTCGGCTCACCCTTCTTAACACTCAAAACACCATTAACGGG
TTCACTAAGTGGGCTATTAACAATGTGTCCCTGAATTTACCCCCCACTCC
TTACTTAGGATCCATCAAATATGGTCTTAAAGATGCTTTTGATCAGAATG
GTCCCCCCGAAAACTTCTCGAATGAGTATGACGTGATGAAACCTCCTGTA
AACGCTAATACAACTCTTGGAAGTGGGGTTTACATGCTTGGTTTAAACAC
CACAGTTGATGTTATACTTCAAAATGCAAACGCGATAAGGCCAAACTTGA
GTGAAACCCACCCTTGGCATTTGCATGGGCATGATTTTTGGGTATTAGGG
CGCGGAGAAGGGAAGTTTACGAAAGAAGATGAGAAGAAATTTAACTTGAA
GAATCCACCATTGAAAAATACTGCGGTGATATTCCCATATGGCTGGACTG
CTTTAAGATTTGTTGCTGATAATCCAGGTGCTTGGGCATTTCACTGCCAT
ATTGAGCCCCATTTCCATATTGGAATGGGTGTGGTTCTTGCTCTTGGTGT
TGAAACCGTTGGTAATATTCCAACCAGGCGTTGGCTTGTGGTTTGAC
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