CX290552

Overview
NameCX290552
Unique NameCX290552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC3_ARATH (Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 56/170 (32.94%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTT-----------LGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 586
            ++NN+S  LP +  +    Y         G P  F+ ++  + PPV  + T            G+  Y L   + V ++LQ+ + + P   E HP HLHG+ F+V+G G G F  + D             T    P GW A+RFVADNPGAW  HCHI+ H   G+ +V
Sbjct:  390 SMNNMSFVLPRSNSVMQAYY--------QGTPGIFTTDFPPV-PPVQFDYTGNVSRGLWQPIKGTKAYKLKYKSNVQIVLQDTSIVTP---ENHPMHLHGYQFYVVGSGFGNFNPRTDPARFNLFDPPERNTIGTPPGGWVAIRFVADNPGAWFMHCHIDSHLGWGLAMV 547          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC4_ARATH (Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 53/159 (33.33%), Postives = 74/159 (46.54%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 577
            +INNV+  +P T  L +  +     F  +    PP  F+     +    N  T  G+ +Y L  N TV ++LQ+   I P   E HP HLHG +F+ +GRG G F    +              +  P G W  +RF ADNPG W  HCH+E H   G+
Sbjct:  380 SINNVTFIMPKTALLPAHYFNTSGVFTTDFPKNPPHVFNYSGGSV---TNMATETGTRLYKLPYNATVQLVLQDTGVIAP---ENHPVHLHGFNFFEVGRGLGNFNSTKDPKNFNLVDPVERNTIGVPSGGWVVIRFRADNPGVWFMHCHLEVHTTWGL 532          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC24_ORYSJ (Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC24 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 54/165 (32.73%), Postives = 76/165 (46.06%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKY-GLKDAFDQNGPPENFSNEYDVMKPPVNANTTL-----GSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVV 586
            ++NN S  LP T  +    Y G  D       P+     +D      + N TL      + V  L  N+TV ++LQN   +     E+HP HLHG +F+VL +G G + +  +              V  P G W  +RFVADNPG W  HCH + H   G+G+V
Sbjct:  395 SMNNASFILPNTTSMLEAMYKGSIDGVYTRDFPDTPPIVFDYTADASDDNATLKHTFKSTKVKTLKYNSTVQMVLQNTRLVS---KESHPMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAVIRFVADNPGVWFMHCHFDAHLEFGLGMV 556          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC17_ARATH (Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 59/196 (30.10%), Postives = 90/196 (45.92%), Query Frame = 2
Query:   11 KIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLNLPPTPYLGSIKYGLKDA-FDQNGP-----PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 577
            K F  +G    P N     T     NT       +I+N+S  +P    L S   G     +    P     P N++       PP N   + G+ + +L  NT+V++++Q+ + +    +E+HP HLHG +F+V+G+G G F    +              V  P G W A+RF+ADNPG W  HCH+E H   G+
Sbjct:  366 KFFFTVGLGTNPCNHKNNQTCQGPTNTT--MFAASISNISFTMPTKALLQSHYSGQSHGVYSPKFPWSPIVPFNYTGT-----PPNNTMVSNGTNLMVLPYNTSVELVMQDTSILG---AESHPLHLHGFNFFVVGQGFGNFDPNKDPRNFNLVDPIERNTVGVPSGGWAAIRFLADNPGVWFMHCHLEVHTSWGL 551          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC9_ARATH (Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  272 SGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTK-EDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPTR 628
            + V  +  N+TV+++LQN   + P   E+HP HLHG +F+VLG G G +    D             T  + P GW  LRF+A+NPG W FHCH++   H+ +G+++A  V+   N PTR
Sbjct:  443 TSVKTIRFNSTVEIVLQNTGILTP---ESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGIWLFHCHMDA--HLPLGIMMAFIVQ---NGPTR 554          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC7_ARATH (Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 56/179 (31.28%), Postives = 86/179 (48.04%), Query Frame = 2
Query:  113 AINNVSLNLPPT-PYLGSIKYGLKDAFDQNGPPE-----NFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPTR 628
            +++N S  LP     L ++ + +K  F  + P +     +++N       P    T   +   +L  NTTV+V+LQN   I    +E+HP HLHG +F VL +G G +    +              +  P G W  +RF A+NPGAW FHCHI+ H   G+G++       V N PT+
Sbjct:  383 SMSNHSFVLPKKLSILEAVFHDVKGIFTADFPDQPPVKFDYTNPNVTQTNPGLLFTQKSTSAKILKFNTTVEVVLQNHALIA---AESHPMHLHGFNFHVLAQGFGNYDPSRDRSKLNLVDPQSRNTLAVPVGGWAVIRFTANNPGAWIFHCHIDVHLPFGLGMIF-----VVKNGPTK 553          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC3_ORYSJ (Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 57/173 (32.95%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  113 AINNVSLNLPPTP-YLGSIKYGLKDAFDQNGP---PENFS----NEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 604
            ++NN+S   P T   L +  YG+   F  + P   P  F     N    +  PV A       +Y L   + V ++LQ+ + + P   E HP H+HG+DF++L  G G F  K+D             T  +   GW  +RFVADNPG W  HCH++   HI  G+ +A  VE
Sbjct:  386 SMNNISFVFPQTTSLLHAHYYGIPGVFTTDFPAYPPVQFDYTAQNVPRYLWQPVPATK-----LYKLKFGSVVQIVLQDTSIVSP---ENHPIHIHGYDFYILAEGFGNFDPKKDAKKFNYVDPPQRNTVAVPTNGWAVIRFVADNPGVWLMHCHLD--VHITWGLAMAFLVE 548          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC21_ORYSJ (Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC21 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 57/164 (34.76%), Postives = 76/164 (46.34%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSIKYG-----LKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 586
            ++NNVS   P    L +  YG      +D F  N  P   +   D  +P V   T  G+ V +L   T V+V+ Q+ +       E+HP HLHG  F+V+G G GKF    +            + V  P  GW A+RF ADNPG W  HCH + H   GM  V
Sbjct:  406 SLNNVSFVSPAIDVLHAYYYGSGRGVYEDDFPNNPAPVFVNLTGDNDRPGV---TKHGAKVKVLEYGTVVEVVFQDTSF------ESHPMHLHGFAFYVVGLGSGKFDDRRDPATYNLLDPPYQSTVSVPKAGWAAIRFRADNPGVWFMHCHFDRHMVWGMNTV 560          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC25_ORYSJ (Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC25 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 45/130 (34.62%), Postives = 62/130 (47.69%), Query Frame = 2
Query:  203 PPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVL 589
            PP  F    D         TT  + V  L  N TV+++LQN   I     E+HP H+HG +F++L +G G + K                 +  P G W  +RFVADNPG W  HCH + H  +G+ +VL
Sbjct:  428 PPVVFDYTGDESDNATMQFTTKSTKVKTLRYNETVEMVLQNTRLIA---KESHPMHIHGFNFFILAQGFGNYDKRRAERRFNLVDPQERNTIAVPTGGWAVIRFVADNPGMWYMHCHFDAHISLGLAMVL 554          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC1_ARATH (Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 53/162 (32.72%), Postives = 78/162 (48.15%), Query Frame = 2
Query:  113 AINNVSLNLPPTPYLGSI-KYGLKDAFDQNGPPENFSNEYDVMK-PPV--NANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGV 583
            ++NN+S   PP   L S  K   K  F  + P E   N +D     PV  N NT  G+ ++ +   + ++++ Q  + +     E HP H+HGH+F+V+GRG G F  E +                 P G W A+R  ADNPG W  HCH+E H   G+ +
Sbjct:  400 SMNNISFVRPPISILESYYKKQSKGVFSLDFP-EKPPNRFDFTGVDPVSENMNTEFGTKLFEVEFGSRLEIVFQGTSFLN---IENHPLHVHGHNFFVVGRGFGNFDPEKDPKRYNLVDPPERNTFAVPTGGWAAIRINADNPGVWFIHCHLEQHTSWGLAM 557          
The following BLAST results are available for this feature:
BLAST of CX290552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LAC3_ARATH1.049e-1732.94Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=... [more]
LAC4_ARATH2.337e-1733.33Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV... [more]
LAC24_ORYSJ2.337e-1732.73Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC17_ARATH3.052e-1730.10Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 S... [more]
LAC9_ARATH3.986e-1738.33Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=... [more]
LAC7_ARATH6.798e-1731.28Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=... [more]
LAC3_ORYSJ6.798e-1732.95Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 ... [more]
LAC21_ORYSJ1.160e-1634.76Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC25_ORYSJ1.978e-1634.62Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC1_ARATH1.978e-1632.72Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC02025D10SK IF1 Citrus clementina cDNA clone C02025D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290552 ID=CX290552; Name=CX290552; organism=Citrus clementina; type=EST; length=647bp
CATTCTCCACAAAATATTTGCCCTAATGGGATCCCCCAAGCCTCCCACAA
ATTTCCACCGTCGGCTCACCCTTCTTAACACTCAAAACACCATTAACGGG
TTCACTAAGTGGGCTATTAACAATGTGTCCCTGAATTTACCCCCCACTCC
TTACTTAGGATCCATCAAATATGGTCTTAAAGATGCTTTTGATCAGAATG
GTCCCCCCGAAAACTTCTCGAATGAGTATGACGTGATGAAACCTCCTGTA
AACGCTAATACAACTCTTGGAAGTGGGGTTTACATGCTTGGTTTAAACAC
CACAGTTGATGTTATACTTCAAAATGCAAACGCGATAAGGCCAAACTTGA
GTGAAACCCACCCTTGGCATTTGCATGGGCATGATTTTTGGGTATTAGGG
CGCGGAGAAGGGAAGTTTACGAAAGAAGATGAGAAGAAATTTAACTTGAA
GAATCCACCATTGAAAAATACTGCGGTGATATTCCCATATGGCTGGACTG
CTTTAAGATTTGTTGCTGATAATCCAGGTGCTTGGGCATTTCACTGCCAT
ATTGAGCCCCATTTCCATATTGGAATGGGTGTGGTTCTTGCTCTTGGTGT
TGAAACCGTTGGTAATATTCCAACCAGGCGTTGGCTTGTGGTTTGAC
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