CX290552

Overview
NameCX290552
Unique NameCX290552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSJ (Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC19 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 58/174 (33.33%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  116 INNVSLNLPPTP------YLGSIKYGLKDAFDQNGP-PENFSNEYDVMKPPVNAN---TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 604
            +NNVS   P T       Y G+ K    + F    P P N++N   +   P+      T   + +     NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D             T  +   GW A+RFV DNPG W  HCH E  FHI MG+  A  VE
Sbjct:  395 MNNVSFAHPKTTALLERYYDGTSKGVYTEDFPIRPPRPFNYTNRDLIPPGPLEEALEPTFKATKLKRFKYNTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE--FHIIMGMATAFIVE 563          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSI (Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 58/174 (33.33%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  116 INNVSLNLPPTP------YLGSIKYGLKDAFDQNGP-PENFSNEYDVMKPPVNAN---TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 604
            +NNVS   P T       Y G+ K    + F    P P N++N   +   P+      T   + +     NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D             T  +   GW A+RFV DNPG W  HCH E  FHI MG+  A  VE
Sbjct:  395 MNNVSFAHPKTTALLERYYDGTSKGVYTEDFPIRPPRPFNYTNRDLIPPGPLEEALEPTFKATKLKRFKYNTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE--FHIIMGMATAFIVE 563          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC15_ORYSJ (Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC15 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 42/109 (38.53%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  302 TVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPT 625
            TVDV+ Q+   ++    +++P HLHGHD ++L +G G +    DE            T ++   GW A+RFVADNPGAW  HCH E  FH+ MG+     VE    + T
Sbjct:  487 TVDVVFQSTAMLQ---GDSNPMHLHGHDVFLLAQGIGIYDAARDEGKFNLVNPPRKNTVLVPNLGWAAVRFVADNPGAWLMHCHFE--FHLSMGMAAVFIVEDGPTVDT 590          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  296 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 604
            N +V+++ Q+   ++   S+++P HLHG+D +VL +G G F  K D             T  +   GW A+RF+ADNPG W  HCH E  FHI MG+  A  VE
Sbjct:  470 NASVEIVFQSTTLLQ---SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLADNPGMWYLHCHFE--FHIIMGMATAFIVE 568          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC5_ORYSJ (Putative laccase-5 OS=Oryza sativa subsp. japonica GN=LAC5 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  278 VYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPTRRWL 637
            V  L  NT+V+++LQ  +      +E+HP H+HG +F+V+G+G G +   ++              V  P G W A+RF+ADNPG W  HCH + H   G+ +   +     G +P+++ L
Sbjct:  424 VVPLAFNTSVELVLQGTSI---QGAESHPLHMHGFNFFVVGQGFGNYDPVNDPANYNLVDPVERNTVSVPTGGWVAVRFLADNPGVWLMHCHFDVHLSWGLSMAWLV---NDGPLPSQKML 538          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC15_ARATH (Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 50/164 (30.49%), Postives = 75/164 (45.73%), Query Frame = 2
Query:  113 AINNVSLNLPP-TPYLGSIKYGLKDAFDQNGP--PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF--TKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 586
            ++NN+S   P     L +  Y +K  +    P  P    N     +P       L + V ++     V++++Q  + +   L   HP HLHG  F+V+G G G +  ++ED               +  P  GW A+RFVADNPG W  HCH++ H   GM VV
Sbjct:  379 SMNNISFVTPSHVDILKAYYYHIKGVYGTRFPEFPPLIFNFTAENQPLFLETPRLATEVKVIEFGQVVELVIQGTSLVGGGLD--HPMHLHGFSFYVVGVGFGNYNISEEDPSSRYNLYDPPYKNTMTVPRNGWIAIRFVADNPGVWFMHCHLDRHQTWGMNVV 540          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSI (Putative laccase-18 OS=Oryza sativa subsp. indica GN=LAC18 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  296 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 604
            N +V+++ Q+   ++   S+++P HLHG+D +VL +G G F  K D             T  +   GW A+RF+ DNPG W  HCH E  FHI MG+  A  VE
Sbjct:  470 NASVEIVFQSTTLLQ---SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLTDNPGMWYLHCHFE--FHIIMGMATAFIVE 568          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC6_ARATH (Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 45/154 (29.22%), Postives = 68/154 (44.16%), Query Frame = 2
Query:  128 SLNLPPTPYLGSIKYGLKDAFD-QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 586
            +L+ P TP         + A+D  NG P + +N+              G+   +    + + +I QN   +    +E HP HLHGH F+V+G G G + ++                V    GW A+RFVA+NPG W  HCH + H   GM  +
Sbjct:  415 TLDFPTTP---------EKAYDFVNGAPNDIANDTQAAN---------GTRAIVFEYGSRIQIIFQNTGTLT---TENHPIHLHGHSFYVIGYGTGNYDQQTAKFNLEDPPYLNTIGVPVG-GWAAIRFVANNPGLWLLHCHFDIHQTWGMSTM 546          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: FIO1_SCHPO (Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe GN=fio1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 44/120 (36.67%), Postives = 57/120 (47.50%), Query Frame = 2
Query:  272 SGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGK--FTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPT 625
            +  Y+      VDVI+ N +  +      HP+HLHGH F VL RGE       + E            T  I P  +  +RF+ADNPGAW  HCHIE H   G+   LA  +E    IP+
Sbjct:  394 TNAYIFEYGDVVDVIIDNHDTGK------HPFHLHGHTFQVLERGEENAGLYSDQESHTYYDNPMRRDTVEIEPGSFIVIRFIADNPGAWVIHCHIEWHMESGL---LATFIEAPEMIPS 504          
BLAST of CX290552 vs. ExPASy Swiss-Prot
Match: LAC3_BOTFU (Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=lcc3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.502e-11
Identity = 33/88 (37.50%), Postives = 41/88 (46.59%), Query Frame = 2
Query:  323 NANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGV 583
            N N    +++  HP HLHGHDF++LG G G +                    + P G W  L F  DNPGAW  HCHI  H   G+ V
Sbjct:  363 NVNGNPVSINVPHPMHLHGHDFFLLGTGVGTYNNTINGPSLDYDNPTRRDVAMLPAGGWMVLAFQTDNPGAWLMHCHIAWHVSEGLAV 450          
The following BLAST results are available for this feature:
BLAST of CX290552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LAC19_ORYSJ8.310e-1533.33Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC19_ORYSI8.310e-1533.33Putative laccase-19 OS=Oryza sativa subsp. indica ... [more]
LAC15_ORYSJ8.310e-1538.53Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC18_ORYSJ9.188e-1439.42Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC5_ORYSJ1.567e-1332.23Putative laccase-5 OS=Oryza sativa subsp. japonica... [more]
LAC15_ARATH2.047e-1330.49Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV... [more]
LAC18_ORYSI2.673e-1338.46Putative laccase-18 OS=Oryza sativa subsp. indica ... [more]
LAC6_ARATH4.560e-1329.22Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=... [more]
FIO1_SCHPO7.778e-1336.67Iron transport multicopper oxidase fio1 OS=Schizos... [more]
LAC3_BOTFU2.502e-1137.50Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02025D10SK IF1 Citrus clementina cDNA clone C02025D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290552 ID=CX290552; Name=CX290552; organism=Citrus clementina; type=EST; length=647bp
CATTCTCCACAAAATATTTGCCCTAATGGGATCCCCCAAGCCTCCCACAA
ATTTCCACCGTCGGCTCACCCTTCTTAACACTCAAAACACCATTAACGGG
TTCACTAAGTGGGCTATTAACAATGTGTCCCTGAATTTACCCCCCACTCC
TTACTTAGGATCCATCAAATATGGTCTTAAAGATGCTTTTGATCAGAATG
GTCCCCCCGAAAACTTCTCGAATGAGTATGACGTGATGAAACCTCCTGTA
AACGCTAATACAACTCTTGGAAGTGGGGTTTACATGCTTGGTTTAAACAC
CACAGTTGATGTTATACTTCAAAATGCAAACGCGATAAGGCCAAACTTGA
GTGAAACCCACCCTTGGCATTTGCATGGGCATGATTTTTGGGTATTAGGG
CGCGGAGAAGGGAAGTTTACGAAAGAAGATGAGAAGAAATTTAACTTGAA
GAATCCACCATTGAAAAATACTGCGGTGATATTCCCATATGGCTGGACTG
CTTTAAGATTTGTTGCTGATAATCCAGGTGCTTGGGCATTTCACTGCCAT
ATTGAGCCCCATTTCCATATTGGAATGGGTGTGGTTCTTGCTCTTGGTGT
TGAAACCGTTGGTAATATTCCAACCAGGCGTTGGCTTGTGGTTTGAC
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