CX290598

Overview
NameCX290598
Unique NameCX290598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 60/196 (30.61%), Postives = 91/196 (46.43%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKK--LSGDDV 585
            G T +A  F  GV++ ADSR + G YI+++   K+  I+  +    +G AAD Q     +  +   H +       V  A+ L   + Y YR   L  G +IAGWD    G  Y    GG +    F++ GSGS Y YG +D+ Y+  M+           +  A  RD +SGGV  +  +   G ++  L GD +
Sbjct:   34 GTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAEPGVERQVLLGDQI 228          
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 58/196 (29.59%), Postives = 96/196 (48.98%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGW--KKLSGDDV 585
            G T +A  F  GV++ +DSR S G  + ++ + K+  ++  +   ++G AAD Q     +  +  +H L       V  A+ L+ NI Y Y+   LS   ++AGWD    G  +  + GG L    F++ GSGS Y YG +D+ Y+  M+           +  A  RD +SGGVA +  +  +    K + G+D+
Sbjct:   18 GTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYK-EELSAHLIVAGWDRRDGGQVFA-TLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSGGVAYIVTIDEHSTDEKVILGNDL 211          
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB9_MUSDU (Proteasome subunit beta type-9 OS=Mus dunni GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 58/175 (33.14%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGV 528
            G T +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGV 192          
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 55/188 (29.26%), Postives = 93/188 (49.47%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKK 567
            G T  A  +K+GV++AADSR +MG YI+++   K+ ++   +    +G AAD Q     L     ++ +      SV  A+ L + + Y  + M LS G ++AG+DE   G  Y    GG L     ++ GSGS + YG  D+ ++ +M+           +  A  RD +SGG   +  +  +G ++
Sbjct:   24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGMER 210          
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 52/185 (28.11%), Postives = 87/185 (47.03%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNG 558
            G T +   +  GV++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H + + +  +V  ++ L+  + Y+ + M L  G ++ GWD+   G  Y    GG +    F++ GSGS Y YG  D  +K +M+           +  A  RD ASGGV     +   G
Sbjct:   12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNM-LQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVIINSEG 195          
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB9_MUSPL (Proteasome subunit beta type-9 OS=Mus platythrix GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 58/175 (33.14%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGV 528
            G T +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRDGSSGGV 192          
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKI--IEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNG 558
            G T +  ++K GV++ AD+RA+ G  ++ ++ +KI  I  N Y  G  AG AAD +     +  K +LH+L+  ++  V  A  +L  +L+ Y+G  +S   ++ G D  GP L+ +   G   +    ++GSGS  A  V ++ YK DM+           I    F D  SG    V  + P+G
Sbjct:   34 GTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCG--AGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQG-HISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNVDVTVIEPSG 216          
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB9_MUSSI (Proteasome subunit beta type-9 OS=Mus spicilegus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 58/175 (33.14%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGV 528
            G T +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGV 192          
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB9_MUSMB (Proteasome subunit beta type-9 OS=Mus musculus bactrianus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 58/175 (33.14%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGV 528
            G T +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGV 192          
BLAST of CX290598 vs. ExPASy Swiss-Prot
Match: PSB9_MOUSE (Proteasome subunit beta type-9 OS=Mus musculus GN=Psmb9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14
Identity = 58/175 (33.14%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    7 GDTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGV 528
            G T +A  F  GV+V +DSR S G  + ++   K+  ++  +   ++G AAD Q        +  LH L  +    V  A+ ++ NI Y YR   L    ++AGWD+   G  Y  + GG L    F++ GSGS Y YG +D+ YK  M+           I  A  RD +SGGV
Sbjct:   20 GTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVY-GTMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGV 192          
The following BLAST results are available for this feature:
BLAST of CX290598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PSB6_BOVIN4.111e-1530.61Proteasome subunit beta type-6 OS=Bos taurus GN=PS... [more]
PSB9_ORYLA5.370e-1529.59Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PSB9_MUSDU9.159e-1533.14Proteasome subunit beta type-9 OS=Mus dunni GN=Psm... [more]
PSB6_SCHPO9.159e-1529.26Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_ARATH9.159e-1528.11Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB9_MUSPL1.196e-1433.14Proteasome subunit beta type-9 OS=Mus platythrix G... [more]
PSB7_DICDI1.196e-1430.11Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB9_MUSSI1.562e-1433.14Proteasome subunit beta type-9 OS=Mus spicilegus G... [more]
PSB9_MUSMB1.562e-1433.14Proteasome subunit beta type-9 OS=Mus musculus bac... [more]
PSB9_MOUSE1.562e-1433.14Proteasome subunit beta type-9 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02025H10SK IF1 Citrus clementina cDNA clone C02025H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290598 ID=CX290598; Name=CX290598; organism=Citrus clementina; type=EST; length=683bp
TGCCAAGGGGACACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGT
GGCTGCTGATTCTCGAGCTAGCATGGGAGGCTATATCTCATCACAGTCTG
TGAAGAAAATTATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGA
GGAGCAGCCGATTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCG
ACTACATGAATTGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAA
AGCTGCTGGCCAACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTT
GGGACTATGATTGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGT
GGACAGTGAAGGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGGATCAG
GTTCACCATATGCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATG
TCTATTGAAGAAGCTGCGGAGTTGGCTAGAAGAGCTATTTATCATGCAAC
ATTCAGAGATGCAGCCAGTGGTGGTGTTGCAAGCGTTTATTATGTGGGAC
CAAATGGATGGAAGAAGCTGTCTGGTGATGATGTTGGAGAGCTTCACTAC
CATTATTATCCAGTCACGCCCAGTACGGTGGAGCAAGAAATGGCTGAAGT
CGCAGGGGCATAATTGAGTCTTGCTCAATTTGG
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