CX290616

Overview
NameCX290616
Unique NameCX290616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: TRXR1_CAEEL (Thioredoxin reductase 1 OS=Caenorhabditis elegans GN=trxr-1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 45/113 (39.82%), Postives = 65/113 (57.52%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAI-EQGKGDILVFTSSFNPMRNTISGRQEKT---VMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 331
            P  VF        GLSEE A+ + GK +I+++ + FNP+  TIS R +K    +  + +  E +KV+G  +  P A E+ QG  +ALK  A KA FD  +GIHP+ AE F T+
Sbjct:  537 PTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPTVAENFTTL 649          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQGKGDIL-VFTSSFNPMRNTISGRQEKTVMKLVV--DAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 331
            P  VF        GLSEE+AIE  K + L V+ + F P+  T++GR   T    ++    + ++V+G  + GP A EI QG A A+KCG TK   D T+GIHP+  E F T+
Sbjct:  569 PTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 680          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQGKGDIL-VFTSSFNPMRNTISGRQEKTVMKLVV--DAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 331
            P  VF        GLSEE+AIE  K + L ++ + F P+  T++GR+  T    ++    + D+V+G  + GP A E+ QG A A+KCG TK   D T+GIHP+  E F T+
Sbjct:  626 PTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: TRXR1_RAT (Thioredoxin reductase 1, cytoplasmic OS=Rattus norvegicus GN=Txnrd1 PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQE-KTVMKLVVDA-ETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRR 349
            P  VF        GLSEE+A+E+ G+ +I V+ S F P+  T+  R   K   K++ +  + ++V+G  + GP A E+ QG A A KCG TK Q DST+GIHP  AE F T+ SVT+R
Sbjct:  371 PTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAGEVTQGFAAA-KCGLTKQQLDSTIGIHPVCAEIFTTL-SVTKR 486          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: TRXR2_HUMAN (Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQ-EKTVMKLVVDAETDK-VLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 334
            P  VF       VGLSEE+A+ + G+  + V+ + + P+  T++GR   +  +K+V   E  + VLG    GP A E+ QG A+ +KCGA+ AQ   TVGIHP+ +EE V +R
Sbjct:  396 PTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLR 508          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHR_CAEEL (Probable glutathione reductase 2 OS=Caenorhabditis elegans GN=trxr-2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = 2
Query:   14 VFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQEKT---VMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPKT 379
            VF    LS VGL+EE+AI++ G+  I VF S F P    +   ++     V  +    E+ K+LG    GP A E++QG AVA + G + +   +T+ IHP S+EEFV +  +T+R   +  +P+T
Sbjct:  377 VFTPLELSTVGLTEEEAIQKHGEDSIEVFHSHFTPFEYVVPQNKDSGFCYVKAVCTRDESQKILGLHFVGPNAAEVIQGYAVAFRVGISMSDLQNTIAIHPCSSEEFVKLH-ITKR---SGQDPRT 498          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: TRXR2_MOUSE (Thioredoxin reductase 2, mitochondrial OS=Mus musculus GN=Txnrd2 PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 3.860e-12
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIE-QGKGDILVFTSSFNPMRNTISGRQ-EKTVMKLVVDAETDK-VLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 331
            P  VF       VGLSEE+A+   G+  + V+ + + P+  T++ R   +  +K+V   E  + VLG    GP A E+ QG A+ +KCGA+ AQ   TVGIHP+ +EE V +
Sbjct:  396 PTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKL 507          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: TRXR2_DROME (Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 2
Query:   14 VFCIPPLSVVGLSEEQAIE-QGKGDILVFTSSFNPMRNTISGRQEK-TVMKLVVDAETD-KVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRR 349
            VF     S VG+SEE AIE +G  +I VF   + P    I  +  +   +K V +   D K+LG    GP A E++QG A ALK G T     +TVGIHP++AEEF T  S+T+R
Sbjct:  391 VFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEF-TRLSITKR 504          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: TRXR2_RAT (Thioredoxin reductase 2, mitochondrial OS=Rattus norvegicus GN=Txnrd2 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIE-QGKGDILVFTSSFNPMRNTISGRQ-EKTVMKLVVDAETDK-VLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTM 331
            P  VF       VGLSEE+A+   G+  I V+ + + P+  T++ R   +  +K+V   E  + VLG    GP A E+ QG A+ ++CGA+ AQ   TVGIHP+ +EE V +
Sbjct:  398 PTTVFTPLEYGCVGLSEEEAVALHGQEHIEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIQCGASYAQVMQTVGIHPTCSEEVVKL 509          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: TRXR2_BOVIN (Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.123e-11
Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQ-GKGDILVFTSSFNPMRNTISGRQ-EKTVMKLVVDAETDK-VLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMR 334
            P  VF       VGLSEE A+ + G+  + V+ + + P+  T+  R   +  +K+V   E  + VLG    GP A E++QG A+ +KCGA+  Q   TVGIHP+ AEE   +R
Sbjct:  383 PTTVFTPLEYGCVGLSEEAAVARHGEEHVEVYHAFYKPLEFTVPQRDASQCYIKMVCLREPPQLVLGLHFLGPNAGEVIQGFALGIKCGASYQQLMRTVGIHPTCAEEVAKLR 495          
The following BLAST results are available for this feature:
BLAST of CX290616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
TRXR1_CAEEL1.085e-1439.82Thioredoxin reductase 1 OS=Caenorhabditis elegans ... [more]
TRXR3_MOUSE1.418e-1440.18Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
TRXR3_HUMAN1.418e-1439.29Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
TRXR1_RAT2.418e-1443.22Thioredoxin reductase 1, cytoplasmic OS=Rattus nor... [more]
TRXR2_HUMAN1.567e-1339.82Thioredoxin reductase 2, mitochondrial OS=Homo sap... [more]
GSHR_CAEEL2.673e-1336.51Probable glutathione reductase 2 OS=Caenorhabditis... [more]
TRXR2_MOUSE3.860e-1238.39Thioredoxin reductase 2, mitochondrial OS=Mus musc... [more]
TRXR2_DROME6.585e-1242.61Thioredoxin reductase 2, mitochondrial OS=Drosophi... [more]
TRXR2_RAT8.600e-1238.39Thioredoxin reductase 2, mitochondrial OS=Rattus n... [more]
TRXR2_BOVIN1.123e-1138.05Thioredoxin reductase 2, mitochondrial OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionC02026B05SK IF1 Citrus clementina cDNA clone C02026B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290616 ID=CX290616; Name=CX290616; organism=Citrus clementina; type=EST; length=647bp
GAGGCCCTGTGCTGTATTTTGCATACCTCCTCTCTCTGTAGTGGGTCTCA
GTGAGGAGCAGGCCATAGAGCAAGGAAAGGGTGATATCCTTGTTTTCACA
TCAAGCTTCAATCCCATGAGGAACACTATCTCTGGACGGCAAGAGAAGAC
AGTAATGAAGCTAGTGGTGGATGCCGAGACGGATAAAGTTCTTGGAGCAT
CAATGTGTGGGCCAGAAGCACCTGAGATATTGCAGGGTATTGCTGTTGCA
CTGAAATGTGGAGCTACGAAGGCACAATTTGACAGCACGGTGGGAATACA
TCCTTCCTCTGCTGAGGAATTCGTGACCATGCGGTCTGTGACGAGACGTG
TTGCTGCCGCAAGCAGCAATCCAAAGACAAATCTGTAAGGTTCAATCAAA
TATCAGAGAGGAAGCGGGTTTGATATTTATACTATGTTGGAACATTATTT
GCTTGAATATAGGTATTTCGCATTACCAAACACAGGAAAAAAGGGGGGGA
AAATGCTGGTATAGCAGGAGTAGCCCAGTTTTGTGGTTTTTATTTTCACC
TAAATAAAAGTTTCATCTTTGAAAATATTGTACAATGGTTTTCATTCTGA
TGGTGCAAACAACAATGTAATTTTATTCCTTAAAAAAAAAAAAAAAA
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