CX290619

Overview
NameCX290619
Unique NameCX290619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_DROMO (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila mojavensis GN=GI12903 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.824e-25
Identity = 66/174 (37.93%), Postives = 105/174 (60.34%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYM-----EVDEPTLRTILMTYKHKTHAV-------DSDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDR 487
            Y + M +MQ  D E F  +   F +ACP+F++P  P+ + P+ +Y +D    QL +F+ EV+QQ+ L   RS+LK+Y++L L++LA+++     E D   L   L+ +KHK   +         +G   S +++DFYIDD+MIH+ ++K   RYGDFF+R+I K     NDL+R
Sbjct:  365 YHDAMFKMQCGDLEVFKSF---FVFACPRFVSPCPPAADAPMEDYVKDPMEHQLLVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFIDPNASEDDVSKLLIRLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKIMK----FNDLNR 531          
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_DROER (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila erecta GN=GG13851 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.824e-25
Identity = 66/174 (37.93%), Postives = 105/174 (60.34%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYM-----EVDEPTLRTILMTYKHKTHAV-------DSDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDR 487
            Y + M +MQ  D E F  +   F +ACP+F++P  P+ + P+ +Y +D    QL +F+ EV+QQ+ L   RS+LK+Y++L L++LA+++     E D   L   L+ +KHK   +         +G   S +++DFYIDD+MIH+ ++K   RYGDFF+R+I K     NDL+R
Sbjct:  366 YHDAMFKMQCGDLEVFKSF---FVFACPRFVSPCPPAADAPMEDYVKDPMEHQLLVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFIDPNASEDDVSKLLIRLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKILK----FNDLNR 532          
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_DROGR (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila grimshawi GN=GH15308 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.607e-25
Identity = 67/174 (38.51%), Postives = 104/174 (59.77%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYM-----EVDEPTLRTILMTYKHKTHAV-------DSDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDR 487
            Y + M +MQ  D E F  +   F +ACP+F++P  P  + PL +Y +D    QL +F+ EV+QQ+ L   RS+LK+Y++L L++LA+++     E D   L   L+ +KHK   +         +G   S +++DFYIDD+MIH+ ++K   RYGDFF+R+I K     NDL+R
Sbjct:  367 YHDAMFKMQCGDLEVFKSF---FVFACPRFVSPCPPVADAPLEDYVKDPMEHQLLVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASFIDPNANEDDVSKLLIRLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKIMK----FNDLNR 533          
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_DROWI (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila willistoni GN=GK20774 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 65/174 (37.36%), Postives = 105/174 (60.34%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYM-----EVDEPTLRTILMTYKHKTHAV-------DSDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDR 487
            Y + M +MQ  D + F  +   F +ACP+F++P  P+ + P+ +Y +D    QL +F+ EV+QQ+ L   RS+LK+Y++L L++LA+++     E D   L   L+ +KHK   +         +G   S +++DFYIDD+MIH+ ++K   RYGDFF+R+I K     NDL+R
Sbjct:  366 YHDAMFKMQCGDLDVFKSF---FIFACPRFVSPCPPAADAPMEDYVKDPMEHQLLVFMDEVRQQKDLPTTRSYLKLYTTLPLAKLASFIDPNASEDDVSKLLIRLLCFKHKMRNLVWSKGPSGLEGSFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKILK----FNDLNR 532          
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_DROAN (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila ananassae GN=GF25000 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 62/177 (35.03%), Postives = 105/177 (59.32%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEV-----DEPTLRTILMTYKHKTHAV-------DSDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRVRL 496
            Y + M +MQ  D + F  +   F +ACP+F++P  P+ + P+ +Y +D    QL +F+ EV+QQ+ L   RS+LK+Y++L L++LA++++      D   L   L+ +KHK   +         +G   S +++DFYIDD+MIH+ ++K   RYGDFF+R+I K   L   L ++ +
Sbjct:  366 YHDAMFKMQCGDLDVFKSF---FVFACPRFVSPCPPAADAPMEDYVKDPMEHQLMVFMDEVRQQKDLPTTRSYLKLYTTLPLAKLASFIDPNASDDDVSKLLIRLLCFKHKMRNLVWSKGPSGLEGAFKSGSELDFYIDDDMIHIADTKVSHRYGDFFVRKILKFNDLNRKLKKITI 539          
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_DICDI (Eukaryotic translation initiation factor 3 subunit L OS=Dictyostelium discoideum GN=eif3l PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 62/157 (39.49%), Postives = 96/157 (61.15%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVDSDG--KITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEG 466
            +G+K++R+Q+ D    S+Y+EL+++A P+ I P  P      V    D +RLQL LFL EVKQQ LL+ +RS++ +YS++ + +LA  +++D   LR  L  YKHK   V   G  K  +  D+DFYID +MIH ++++   +  D F+  I K EG
Sbjct:  451 FGDKLLRLQKGD---LSVYEELYTFAAPRCIGPVPPYISGFNVTA-LDPHRLQLSLFLEEVKQQSLLTTIRSYITLYSTISIQKLAGLLQIDPEDLRVKLTCYKHKLFNVLGKGETKWNNQLDIDFYIDQDMIH-IDNRLYAKETDSFINSILKFEG 602          
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_COCIM (Eukaryotic translation initiation factor 3 subunit L OS=Coccidioides immitis GN=CIMG_04353 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 56/158 (35.44%), Postives = 99/158 (62.66%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVD------SDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAK 457
            YG++ IR+QR   +A  +Y+ELF  ACPKFI+P+ P F+ P +N   D       +F+ EV+       V+S+LK+Y+++ L +LA ++EV+   LR+ L+  K ++  V        +G+I +++D+D+ I+ N+IH+ E+K  +R  D++LR +A+
Sbjct:  324 YGDQFIRLQRGGPDALPLYEELFRSACPKFISPTPPDFDNPALNI--DPVDHHTAVFMDEVRNTLYNPTVKSYLKLYTTMDLKKLAGFLEVEPEQLRSWLLVNKLRSRQVRWSEGGLLEGEIVNSSDLDYAIEGNLIHISETKAGRRLVDWYLRNLAR 479          
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_NEOFI (Eukaryotic translation initiation factor 3 subunit L OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_085780 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 54/159 (33.96%), Postives = 98/159 (61.64%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVD------SDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKL 460
            YGE+++R+Q    +A  +++ELF  ACPKFI+P+ P F+ P +N   D       +F+ EVK       +RS+LK+Y+++ L +LA ++EV    LR+ L+  K ++  V        +G++ S  D+D+ +++++IHV E+K  +R  D++LR +A++
Sbjct:  319 YGEQLLRLQHGGPDALPLFEELFRSACPKFISPTPPDFDNPALNI--DPVDHHTAIFMDEVKNTLYNPTIRSYLKLYTTMDLKKLAGFLEVQPEVLRSWLLVNKQRSRQVRWVEGGLLEGEVVSANDLDYALENDLIHVSETKAGRRLVDWYLRNLARV 475          
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_ASPFU (Eukaryotic translation initiation factor 3 subunit L OS=Aspergillus fumigatus GN=AFUA_2G10380 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 54/159 (33.96%), Postives = 98/159 (61.64%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVD------SDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKL 460
            YGE+++R+Q    +A  +++ELF  ACPKFI+P+ P F+ P +N   D       +F+ EVK       +RS+LK+Y+++ L +LA ++EV    LR+ L+  K ++  V        +G++ S  D+D+ +++++IHV E+K  +R  D++LR +A++
Sbjct:  319 YGEQLLRLQHGGPDALPLFEELFRSACPKFISPTPPDFDNPALNI--DPVDHHTAIFMDEVKNTLYNPTIRSYLKLYTTMDLKKLAGFLEVQPEVLRSWLLVNKQRSRQVRWVEGGLLEGEVVSANDLDYALENDLIHVSETKAGRRLVDWYLRNLARV 475          
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_ASPFC (Eukaryotic translation initiation factor 3 subunit L OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_026190 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.705e-22
Identity = 54/159 (33.96%), Postives = 98/159 (61.64%), Query Frame = 2
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVD------SDGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKL 460
            YGE+++R+Q    +A  +++ELF  ACPKFI+P+ P F+ P +N   D       +F+ EVK       +RS+LK+Y+++ L +LA ++EV    LR+ L+  K ++  V        +G++ S  D+D+ +++++IHV E+K  +R  D++LR +A++
Sbjct:  319 YGEQLLRLQHGGPDALPLFEELFRSACPKFISPTPPDFDNPALNI--DPVDHHTAIFMDEVKNTLYNPTIRSYLKLYTTMDLKKLAGFLEVQPEVLRSWLLVNKQRSRQVRWVEGGLLEGEVVSANDLDYALENDLIHVSETKAGRRLVDWYLRNLARV 475          
The following BLAST results are available for this feature:
BLAST of CX290619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3L_DROMO5.824e-2537.93Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DROER5.824e-2537.93Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DROGR7.607e-2538.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DROWI9.935e-2537.36Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DROAN1.298e-2435.03Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DICDI3.196e-2339.49Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_COCIM7.120e-2335.44Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_NEOFI2.705e-2233.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_ASPFU2.705e-2233.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_ASPFC2.705e-2233.96Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02026B08SK IF1 Citrus clementina cDNA clone C02026B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290619 ID=CX290619; Name=CX290619; organism=Citrus clementina; type=EST; length=690bp
ATATGGGGAGAAGATGATTCGGATGCAAAGATATGATGATGAAGCATTTT
CTATCTATGATGAGCTCTTCTCGTATGCATGTCCTAAGTTCATTACTCCC
TCTGCTCCGAGCTTTGAGGAGCCTCTTGTAAATTACAACCAGGATGCCTA
TAGACTCCAGTTGAAGCTTTTCCTTTATGAGGTGAAGCAGCAACAATTAT
TATCAGGAGTCCGATCTTTCTTGAAAGTGTATTCATCACTGTACCTTTCG
GAGCTTGCAACTTACATGGAAGTGGATGAGCCCACTCTTAGGACTATCCT
GATGACATACAAGCACAAGACTCACGCCGTTGATTCTGATGGGAAGATTA
CTTCTAATGCAGATGTGGATTTCTACATTGATGATAATATGATTCATGTA
GTTGAGTCCAAGCCGGTGAAGCGATATGGTGATTTTTTCTTGCGGCAGAT
TGCCAAGCTCGAAGGGTTGATTAATGATTTGGACAGGGTAAGGCTGGACT
GAGCTGACACCATACCGGACTTCAACTTCTCTGCTGCTTCCGGTTTCCCC
TTCCTTTTTCTATCTATTCGATAAATGACAGAGATTTTGTACTACTTAGT
TGGCATTTTCTCGTTTGAATTAGTGAGATGTCTATGTTTAGCTTTGGAAT
GTAATTCAGTTTCTACATTTTTTTTTAATTTAAAAATTAT
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