CX290628

Overview
NameCX290628
Unique NameCX290628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:996..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35
Identity = 73/155 (47.10%), Postives = 99/155 (63.87%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 489
            F  Y +QV  NA  L   +   GY+L TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    KD+  L   VE+F++ F++PG
Sbjct:  349 FVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.441e-34
Identity = 72/155 (46.45%), Postives = 98/155 (63.23%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 489
            F  Y +Q+  NA  L   L   GYSL TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    +++  L   VE+F+  F++PG
Sbjct:  353 FVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.154e-34
Identity = 75/158 (47.47%), Postives = 104/158 (65.82%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 492
            P F+ Y+ Q+  NA A+ N L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSRG LE DF ++  F+   V + LE++ +  K L+DF   L+ + +     AD    VE+FA +F MPGF
Sbjct:  345 PMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTTK-LQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGF 501          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.082e-33
Identity = 75/165 (45.45%), Postives = 107/165 (64.85%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 519
            +KAY +QV +N+      L   GY LV+GGTENHLVL +L+  G+ G+KVEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++  F   AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  353 YKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.719e-33
Identity = 73/168 (43.45%), Postives = 110/168 (65.48%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKYKD 519
            P ++AY +QV +N+      L  KGY LV+GGT+NHLVL +++  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +F   AV + ++++ E  G  LKDF   L ++     +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  351 PEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32
Identity = 73/165 (44.24%), Postives = 105/165 (63.64%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 519
            +KAY +QV +N       L   GY LV+GGTENHLVL +L+  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++      AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  353 YKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32
Identity = 72/158 (45.57%), Postives = 104/158 (65.82%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD----IEALKADVEKFASSFDMPGF 492
            P F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++ +  K L+DF   L+ + +    +  L+  VE+FA +F MPGF
Sbjct:  345 PMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAK-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 501          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32
Identity = 72/158 (45.57%), Postives = 104/158 (65.82%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 492
            P F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++++  K L+DF   L+ + +     AD    V++FA +F MPGF
Sbjct:  345 PMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTAK-LQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 7.403e-31
Identity = 78/158 (49.37%), Postives = 101/158 (63.92%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN--KDIEALKADVEKFASSFDMP 486
            P FK Y ++V ANA AL   L   GY LV+ GT++H+VL DLRP+G+ G +VE L +  NIT NKNAV GD SAL PGG+RIGTPAMTSRG  E DFE++  F+  AV L  EIQ    KE  K  KDF   +  +    I  LK ++  ++++F +P
Sbjct:  314 PEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANK-QKDFKAKIATSDIPRINELKQEIAAWSNTFPLP 470          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.267e-30
Identity = 72/173 (41.62%), Postives = 104/173 (60.12%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYL------TGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQK------------EYGKLLKDFNKGLVNNK---DIEALKADVEKFASSFDMP 486
            P F+AY  QV ANA AL   L       G GY++V+GGT+NHLVL DL+P G+ G++VE++ +L  +  NKN V GD SAL PGG+RIGTPAMT+RG  E+DF ++ + + RAVT+ + I K            +    +K F   L N +   +I  L+++VE +  ++  P
Sbjct:  350 PEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYPCP 522          
The following BLAST results are available for this feature:
BLAST of CX290628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CAEEL8.451e-3547.10Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEBR1.441e-3446.45Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_BOVIN7.154e-3447.47Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR2.082e-3345.45Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU2.719e-3343.45Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR2.301e-3244.24Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_HUMAN2.301e-3245.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT3.006e-3245.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR7.403e-3149.37Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_NEUCR6.267e-3041.62Putative serine hydroxymethyltransferase, mitochon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01002G07Rv Veg1 Citrus clementina cDNA clone C01002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290628 ID=CX290628; Name=CX290628; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCNNNNNNNNNNNNNNNNNNNNCCCCTGCATTCAAGGCCTATGC
GAAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCA
AGGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGG
GATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGA
CCTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTG
CCTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGA
GGTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGC
TGTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGG
ACTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCT
GATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTC
CGAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTA
back to top