CX290628

Overview
NameCX290628
Unique NameCX290628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:996..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.182e-28
Identity = 67/155 (43.23%), Postives = 101/155 (65.16%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 483
            P FK Y +QV  NA AL +  T KGY LV+ GT++H+VL  L+   + G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RGL E+DF++I  ++  AV    E+Q +  K    LKDF   +  + + ++A++ ++ ++A SF +
Sbjct:  314 PEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGDSEKLKAVRDEIYQWAGSFPL 468          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.491e-28
Identity = 72/160 (45.00%), Postives = 96/160 (60.00%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMP 486
            P F  Y K V +NA A+ N    +GY LV+GGT+ HLVL DL   G+ G +VE++ +L NI+ NKN V GD SAL P G+R+GTPA T+RG  EKDFE++ E +   V+LT +I     KE     +DF K  V +     +I  LK +V  +A  FD P
Sbjct:  313 PEFYQYQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDF-KAYVGDGSKFSEIAKLKKEVITWAGKFDFP 471          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.866e-28
Identity = 61/160 (38.12%), Postives = 99/160 (61.88%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ-------KEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 489
            P F  Y KQV +NA A G+ L  +G+ LV+GGT+NHL+L +L  +G+ G ++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG  E+DF+++ E++  AV L++ ++       K+    L  F +    ++ ++ L  +V  +  +F +PG
Sbjct:  324 PEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSFKQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.966e-27
Identity = 64/155 (41.29%), Postives = 95/155 (61.29%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKDI-EALKADVEKFASSFDM 483
            P FK Y  QV  NA AL +     GY LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I +++++AV    ++Q+   K    LKDF   +    D+    K ++  +A  + +
Sbjct:  313 PEFKEYQTQVLKNAKALESEFKNLGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKVDEGSDVLNTWKKEIYDWAGEYPL 467          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.171e-26
Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNK---DIEALKADVEKFASSFDM 483
            PA+K Y  QV  NA         +GY L   GT++H+VL D++  G+ G + E++ +L NI  NKN V  D SA +P G+R+GTPAMT+RG  E+DF ++ +++ RA+T    +QKE  K    LKDF   L   +   ++  L+ +V ++ASSF +
Sbjct:  307 PAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAEWASSFPL 463          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.223e-25
Identity = 61/158 (38.61%), Postives = 96/158 (60.76%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ-KEYGK----LLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 489
            P +  Y ++V +NA    + L  KG+ LV+ GT+ HL+L DLR   + G +VE + +  NI  NKN V GD SAL P G+R+GTPAMT+RG   ++F+++ EF+ +AV + +E++ +E GK    LL  F K    +  ++ L  +V  + S + +PG
Sbjct:  334 PEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVKQLDKEVVSWVSKYPVPG 491          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.597e-25
Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 483
            P FK Y  QV  NA AL N     GY LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  ++ +AV    + Q    K    LKDF   +    D +  LK ++  + + + +
Sbjct:  313 PEFKEYQTQVLKNAKALENEFQTLGYRLVSNGTDSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKVDEIADQLAPLKKEIYDWTAEYPL 467          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.725e-25
Identity = 62/160 (38.75%), Postives = 91/160 (56.88%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD-------IEALKADVEKFASSFDMPG 489
            P FK Y   V  NA   G  L  KG+ LV+GGT+ HL+L +L  LG+ G ++E L +  NI  NKN + GD SAL P G+R+GTPAMT+RG   ++F Q+  ++ RAV L + I+ +     KD    L + K+       ++ L  +V ++   F +PG
Sbjct:  337 PEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQESPDAKDARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 58/147 (39.46%), Postives = 87/147 (59.18%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFAS 471
            P FK Y   V  NA   G  L+ +G+SLV+GGT+ HL+L DL P+G+ G+++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG    +F ++  +++ AV L + ++ +     KD    L + K   A    V K A+
Sbjct:  336 PEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQEPVDAKDAKTRLAHFKSFCAESEQVTKLAN 482          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 63/156 (40.38%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDMP 486
            P F+ Y + V  NA  L        Y LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  +++RAV +   IQ+   K    LKDF   +    D I  L  ++  +   + +P
Sbjct:  313 PEFREYQELVLKNAKVLETEFKKLNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEGGTDEIAQLAQEIYSWTEEYPLP 468          
The following BLAST results are available for this feature:
BLAST of CX290628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CANAL1.182e-2843.23Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_SCHPO4.491e-2845.00Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_CANGA5.866e-2838.13Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_YEAST4.966e-2741.29Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYD_SCHPO7.171e-2639.49Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_CANAL1.223e-2538.61Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA1.597e-2541.94Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_KLULA2.725e-2538.75Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ASHGO1.035e-2439.46Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ASHGO1.035e-2440.38Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]

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Properties
Property NameValue
Genbank descriptionC01002G07Rv Veg1 Citrus clementina cDNA clone C01002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290628 ID=CX290628; Name=CX290628; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCNNNNNNNNNNNNNNNNNNNNCCCCTGCATTCAAGGCCTATGC
GAAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCA
AGGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGG
GATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGA
CCTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTG
CCTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGA
GGTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGC
TGTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGG
ACTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCT
GATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTC
CGAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTA
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