CX290628

Overview
NameCX290628
Unique NameCX290628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:996..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLH 345
            PAF AY KQ+ ANA AL   LT +G+ LV+GGT+NHL+L DLR   LTG + EK  D C ITVNKNA+ F   S     G+RIGTPA TSRG+ E   +Q+ E +H
Sbjct:  279 PAFTAYQKQIAANAAALAKGLTDRGFQLVSGGTDNHLMLVDLRNKQLTGKEAEKRLDECRITVNKNAIPFDPQSPFVTSGIRIGTPAATSRGMDEAAMDQVAEAIH 384          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 60/160 (37.50%), Postives = 91/160 (56.88%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL-----TLE--IQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 489
            P FK Y +++  N+      LT  GY LV+GGT+NHL++ DL    + G +VE +    NI  NKN + GD SAL P G+RIGTPAMT+RG   ++F Q+ +++  AV L     TLE   + +    L +F K    + ++ AL  ++ K+   + +PG
Sbjct:  329 PEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            P ++AY  QV  NA AL   L  +GY LVTGGT+NHL+L DLRP G+TG   E L D  +ITVNKNA+  D    +   G+RIGTPAMT+RG+ E +  QI + + RA+T
Sbjct:  276 PDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAIT 385          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_EXIS2 (Serine hydroxymethyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.820e-22
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FK Y +QV ANA  LG  LT +G  +V+GGT+NHL+L DL+PLG+TG   E   D   ITVNKN + F  +S     G+RIGT AMTSRG  E + +QI E +
Sbjct:  281 PEFKDYIEQVVANAKVLGEELTARGLRIVSGGTDNHLLLVDLQPLGITGKLAEHALDEAGITVNKNTIPFDPASPFVTSGIRIGTAAMTSRGFKEAEMKQIAELI 385          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.072e-21
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 360
            P FKAY +Q+  NA AL   L  +G++LV+GGT+NHL+L DLR  G+TG + E L D  +IT NKNA+ F         G+R+GTPA+T+RG  EKD +++ E +  A+TL
Sbjct:  278 PEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII--ALTL 386          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_RICRS (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Sheila Smith) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 456
            P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_RICRO (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 456
            P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 54/110 (49.09%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            PAF+ YA QV  NA A+    T  GY +V+GGT+NHL+L DLR   +TG   E L     ITVNKN V F D S     G+R+GTPAMT+RG+ E D   I E + R +T
Sbjct:  297 PAFRDYAAQVIKNAAAMAEKFTELGYKIVSGGTKNHLMLLDLRSKNVTGKVAENLLHSAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMNEADSVLIAELIDRVIT 406          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_RICPU (Serine hydroxymethyltransferase OS=Rickettsia peacockii (strain Rustic) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 456
            P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQKV 405          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_RICCN (Serine hydroxymethyltransferase OS=Rickettsia conorii GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 456
            P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQKV 405          
The following BLAST results are available for this feature:
BLAST of CX290628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HELMI1.035e-2454.72Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYM_YEAST3.013e-2437.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYA_SYMTH3.013e-2451.82Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_EXIS22.820e-2251.43Serine hydroxymethyltransferase OS=Exiguobacterium... [more]
GLYA_DESRM1.072e-2147.75Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_RICRS1.399e-2140.56Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_RICRO1.399e-2140.56Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_PELPB1.399e-2149.09Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA_RICPU1.828e-2140.56Serine hydroxymethyltransferase OS=Rickettsia peac... [more]
GLYA_RICCN1.828e-2140.56Serine hydroxymethyltransferase OS=Rickettsia cono... [more]

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Properties
Property NameValue
Genbank descriptionC01002G07Rv Veg1 Citrus clementina cDNA clone C01002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290628 ID=CX290628; Name=CX290628; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCNNNNNNNNNNNNNNNNNNNNCCCCTGCATTCAAGGCCTATGC
GAAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCA
AGGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGG
GATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGA
CCTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTG
CCTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGA
GGTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGC
TGTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGG
ACTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCT
GATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTC
CGAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTA
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