CX290628

Overview
NameCX290628
Unique NameCX290628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:996..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_RICAE (Serine hydroxymethyltransferase OS=Rickettsia africae (strain ESF-5) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 456
            P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQKV 405          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLK 399
            P FK Y +++ +NA AL + L  +G+ LV+GGT+NHL+L DLR   +TG + ++L D   +TVNKNAV F         G+RIGTPA+TSRGL E D  QI E +  A+    E + + GKL K
Sbjct:  281 PGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAI----EHRDDRGKLEK 400          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 336
            P FK Y KQ+  NA AL   L  +G  +V+ GT+NHL+L DL P GLTG  +EKL D  +IT NKN +  D        G+R+GTPA TSRGL E DF+++ E
Sbjct:  280 PEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVAE 382          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 405
            P FK Y KQ+  NA A+   L   GY LV+GGT+NHL+L DLR  G+TG + EK  +   ITVNKNA+ F         G+RIGTPA+T+RG+ E +   I   +H  ++      +  +++KE  +L K F
Sbjct:  276 PEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIARLIHEVLSNFKDERVKEKVKKEVEELCKQF 407          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_DEIGD (Serine hydroxymethyltransferase OS=Deinococcus geothermalis (strain DSM 11300) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 486
            P FK YA Q+  NA AL      +GY +V+GGT+NHL + DLRP GL G K  +  D  +IT++K+ + +     L  GG+RIGTPA+T+RG+ E D E++ + + RA+                  KG       E +KA+V  FA SF +P
Sbjct:  285 PEFKDYAAQIIRNAQALAGAFQNRGYRVVSGGTDNHLFVLDLRPQGLNGTKATRRLDANDITISKSTLPYDTEKILHGGGIRIGTPAITTRGMKEADMERVADLIDRAL------------------KG-------EDVKAEVHAFAGSFPLP 412          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CYAA5 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FK Y+ QV ANA AL N L  +G+ LV+GGT+NHL+L DLR + +TG + +KL    NIT NKN V F   S     G+R+G+PAMT+RGL  ++F +IG  +
Sbjct:  282 PEFKVYSGQVIANAQALANQLNQRGFKLVSGGTDNHLMLVDLRCIDMTGKEADKLVSEINITANKNTVPFDPESPFVTSGLRLGSPAMTTRGLGVEEFREIGNII 386          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 53/110 (48.18%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            P FKAYA+Q+K NA A+       GY +V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+RIGTPAMT+RG+   + E+I EF+ R ++
Sbjct:  297 PEFKAYAQQIKDNAAAMAAKFLAAGYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKVAEAEKIVEFIDRVIS 406          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPD (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 53/110 (48.18%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            P F+ YA QVK NA  + +  +  GY++V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+RIGTPAMT+RG+ E D E+I E + R V+
Sbjct:  297 PEFRDYALQVKKNAAVMADKFSSLGYTIVSGGTKNHLMLLDLRNKNVNGKVAENLLHQAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKESDSERIVELIDRVVS 406          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 54/132 (40.91%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 405
            P FK Y KQ+  NA A+   L   GY LV+GGT+NHL+L DLR  G+TG + EK  +   ITVNKNA+ F         G+RIGTPA+T+RG+ E +   +   +H  ++      +  +++KE  +L K F
Sbjct:  276 PEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVARLIHEVLSNFKDSKVKEKVKKEVEELCKQF 407          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP8 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glyA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 50/105 (47.62%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FKAY+ QV AN+ AL   L  +G+ LV+GGT+NHL+L DLR +G+TG + ++L    NIT NKN V F   S     G+R+G+PA+T+RG+ E +F++IG  +
Sbjct:  282 PQFKAYSGQVIANSRALAAQLMERGFKLVSGGTDNHLMLVDLRSIGMTGKEADRLVSEINITANKNTVPFDPESPFVTSGLRLGSPALTTRGMGESEFKEIGNII 386          
The following BLAST results are available for this feature:
BLAST of CX290628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_RICAE1.828e-2140.56Serine hydroxymethyltransferase OS=Rickettsia afri... [more]
GLYA_PELTS1.828e-2145.97Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_EUBR31.828e-2149.51Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_DICTD1.828e-2141.67Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_DEIGD1.828e-2138.56Serine hydroxymethyltransferase OS=Deinococcus geo... [more]
GLYA_CYAA51.828e-2149.52Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_CHLTE1.828e-2148.18Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_CHLPD1.828e-2148.18Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_DICT62.387e-2140.91Serine hydroxymethyltransferase OS=Dictyoglomus th... [more]
GLYA_CYAP82.387e-2147.62Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC01002G07Rv Veg1 Citrus clementina cDNA clone C01002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290628 ID=CX290628; Name=CX290628; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCNNNNNNNNNNNNNNNNNNNNCCCCTGCATTCAAGGCCTATGC
GAAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCA
AGGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGG
GATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGA
CCTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTG
CCTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGA
GGTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGC
TGTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGG
ACTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCT
GATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTC
CGAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTA
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