CX290628

Overview
NameCX290628
Unique NameCX290628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:996..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_PHYMT (Serine hydroxymethyltransferase OS=Phytoplasma mali (strain AT) GN=glyA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLG--LTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            F  Y KQ+  NA      L  KGY +++  TENHL L D++      TG K+  + +  NI VNKN + F   + L   G+R+GTPAMT+RG  E +F ++ +F+  A+T
Sbjct:  284 FIKYQKQILKNACFFAENLQKKGYRIISKSTENHLFLVDVKSKNPNFTGKKISDILNKVNIVVNKNVIPFDKETPLITSGIRLGTPAMTTRGFKENEFAKVSDFIDEAIT 393          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_NITEC (Serine hydroxymethyltransferase OS=Nitrosomonas eutropha (strain C91) GN=glyA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            PAFK Y KQV  NA  +   L  +G  +V+G T+ H+ L DLR   LTG + E   +  +ITVNKNA+  D        GVRIGTPA+T+RG  E + EQ+   +
Sbjct:  280 PAFKDYQKQVIENARVMARVLQQRGLRIVSGHTDCHMFLVDLRAKNLTGREAETALETAHITVNKNAIPNDPQKPFVTSGVRIGTPAITTRGFKELESEQLANLV 384          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_NEIGO (Serine hydroxymethyltransferase OS=Neisseria gonorrhoeae GN=glyA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 318
            P FK YAKQVK NA  +   L  +G  +V+G TE+H+ L DL+P+ +TG   E      +ITVNKNA+  D        G+RIG+ AMT+RG  E D
Sbjct:  280 PEFKQYAKQVKINAAVMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAALGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNETD 376          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_NEIG2 (Serine hydroxymethyltransferase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=glyA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 318
            P FK YAKQVK NA  +   L  +G  +V+G TE+H+ L DL+P+ +TG   E      +ITVNKNA+  D        G+RIG+ AMT+RG  E D
Sbjct:  280 PEFKQYAKQVKINAAVMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAALGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNETD 376          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_NEIG1 (Serine hydroxymethyltransferase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=glyA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 318
            P FK YAKQVK NA  +   L  +G  +V+G TE+H+ L DL+P+ +TG   E      +ITVNKNA+  D        G+RIG+ AMT+RG  E D
Sbjct:  280 PEFKQYAKQVKINAAVMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAALGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNETD 376          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_DESAH (Serine hydroxymethyltransferase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=glyA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 354
            P+F  Y +QV ANA  L + L  +G  LV+ GT+NHL+L +L   G++G   E       ITVNKNAV  D    +   G+RIGTP +T+RG+ E + + + E + +A+
Sbjct:  278 PSFAQYQRQVVANAATLADALMDRGMKLVSNGTDNHLMLLNLTHNGISGKDAENRLGAAGITVNKNAVPNDPRGPMITSGIRIGTPLVTTRGMGETEMDLVAELITQAL 386          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_AGRRK (Serine hydroxymethyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glyA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P F+ YA Q+  NA AL   L   G  +V+GGT+NHL+L DLR    TG + E       +T NKN + F         GVR+GTPA T+RG  E +F +IG  +
Sbjct:  287 PEFQDYAAQIVKNAKALSETLISGGVDVVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYVTCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFKEAEFREIGNLI 391          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FKAY +QV  NA A+   L  +G  +V+G TE+H++L DLR   +TG + EK+    +ITVNKNA+  D        G+R+G+PAMT+RG  E +  ++   +
Sbjct:  280 PTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAHLI 384          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA1_HAHCH (Serine hydroxymethyltransferase 1 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            PAF+ Y +QV  NA A+ + +  +GY +V+GGT+NHL L DL   G+TG   +       ITVNKN V  D  S     G+RIGTP +T+RG  EK+  ++  ++
Sbjct:  282 PAFRDYQQQVVNNARAMADAVKARGYKVVSGGTDNHLFLIDLIDKGVTGKDADAALGRAYITVNKNTVPNDPQSPFVTSGLRIGTPGVTTRGFKEKEVVELANWI 386          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_SPHWW (Serine hydroxymethyltransferase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=glyA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FKAYA  V  NA  L   L  +G  LV+GGT+ HL L DLRP+G+TG   ++  +   IT NKN V  D    +   G+R+G+PA T+RG    +F +I + +
Sbjct:  295 PEFKAYAAAVVENAKVLAARLKERGADLVSGGTDTHLALVDLRPIGVTGRDADEALERAGITCNKNGVPNDPLPPVKTSGIRVGSPAGTTRGFGPAEFREIADMI 399          
The following BLAST results are available for this feature:
BLAST of CX290628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PHYMT5.151e-1639.09Serine hydroxymethyltransferase OS=Phytoplasma mal... [more]
GLYA_NITEC5.151e-1643.81Serine hydroxymethyltransferase OS=Nitrosomonas eu... [more]
GLYA_NEIGO5.151e-1645.36Serine hydroxymethyltransferase OS=Neisseria gonor... [more]
GLYA_NEIG25.151e-1645.36Serine hydroxymethyltransferase OS=Neisseria gonor... [more]
GLYA_NEIG15.151e-1645.36Serine hydroxymethyltransferase OS=Neisseria gonor... [more]
GLYA_DESAH5.151e-1640.37Serine hydroxymethyltransferase OS=Desulfobacteriu... [more]
GLYA_AGRRK5.151e-1641.90Serine hydroxymethyltransferase OS=Agrobacterium r... [more]
GLYA1_RALSO5.151e-1640.95Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA1_HAHCH5.151e-1641.90Serine hydroxymethyltransferase 1 OS=Hahella cheju... [more]
GLYA_SPHWW6.727e-1641.90Serine hydroxymethyltransferase OS=Sphingomonas wi... [more]

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Properties
Property NameValue
Genbank descriptionC01002G07Rv Veg1 Citrus clementina cDNA clone C01002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290628 ID=CX290628; Name=CX290628; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCNNNNNNNNNNNNNNNNNNNNCCCCTGCATTCAAGGCCTATGC
GAAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCA
AGGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGG
GATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGA
CCTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTG
CCTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGA
GGTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGC
TGTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGG
ACTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCT
GATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTC
CGAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTA
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