CX290628

Overview
NameCX290628
Unique NameCX290628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:996..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_DEIRA (Serine hydroxymethyltransferase OS=Deinococcus radiodurans GN=glyA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 354
            P FK YA+Q+  NA AL      KGY +V+GGT+NHL L DLRP GL G K  +L D  +IT++K+ + +     L  GG+RIGTPA+T+RG+ E    Q+ + + RA+
Sbjct:  281 PEFKDYARQIIKNAQALAGEFQQKGYRVVSGGTDNHLFLLDLRPQGLNGTKATRLLDANHITISKSTLPYDTEKILHGGGIRIGTPAVTTRGMTEAHMTQVADLIDRAL 389          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   34 AFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLL 396
            +FK YA ++ +NA AL N LT +G++LV+GGT+NHL+L DL+ + +TG + E + D  NIT NKN V  D +S     G+R+GTPA+T+RG  EKD   + E +   V   ++  KE  K L
Sbjct:  281 SFKDYAGKIISNAGALANELTARGFNLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLGTPAITTRGFNEKDMAVVAEAI-SLVVKDVDKNKEQAKAL 401          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            F+ Y  Q+  NA AL   L  +G+ LV+GGT+NHL+L DLR  G+TG   EK  D  NIT NKNA+ F   S +   G+R+GTPA+T+RG  E+D  ++ + +H A+T
Sbjct:  283 FRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVADIIHDALT 390          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_SILST (Serine hydroxymethyltransferase OS=Silicibacter sp. (strain TM1040) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 354
            P FK+Y KQV+ANAVAL + L   G  +VTGGT+ H++L DLRP G+TGN V+K     +IT NKN + F         G+R+GTPA T+RG  E++F +I   +   V
Sbjct:  288 PEFKSYQKQVRANAVALADELIKGGLDIVTGGTDTHVMLVDLRPKGVTGNIVDKALGRAHITTNKNGIPFDPEKPTVTSGIRLGTPAGTTRGFGEEEFREIARLIVEVV 396          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_DESVV (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 57/132 (43.18%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 405
            PAFK Y KQV  NA AL   LT  G+ LV+GGT+NHL+L DL    +TG   E   D   ITVNKN V F   S     GVR+GTPA+T+RG+   + E++G ++  A+      T   EI +E  +  + F
Sbjct:  276 PAFKEYQKQVVDNAAALAGVLTAAGFDLVSGGTDNHLMLVDLTSKDVTGKDAEIALDKAGITVNKNTVPFETRSPFVTSGVRLGTPALTTRGMKAAEMEKVGGWIVDAIANTTNETRLAEISREVERFARQF 407          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_DESVH (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 57/132 (43.18%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 405
            PAFK Y KQV  NA AL   LT  G+ LV+GGT+NHL+L DL    +TG   E   D   ITVNKN V F   S     GVR+GTPA+T+RG+   + E++G ++  A+      T   EI +E  +  + F
Sbjct:  276 PAFKEYQKQVVDNAAALAGVLTAAGFDLVSGGTDNHLMLVDLTSKDVTGKDAEIALDKAGITVNKNTVPFETRSPFVTSGVRLGTPALTTRGMKAAEMEKVGGWIVDAIANTTNETRLAEISREVERFARQF 407          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_THET8 (Serine hydroxymethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glyA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 354
            P FK Y++ V  NA  L   L  +GY +VTGGT+NHL L DLRP GLTG + E+  D   ITVNKNA+ F         G+RIGTPA+T+RG   ++   + E + RA+
Sbjct:  277 PEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRAL 385          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_THET2 (Serine hydroxymethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glyA PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 354
            P FK Y++ V  NA  L   L  +GY +VTGGT+NHL L DLRP GLTG + E+  D   ITVNKNA+ F         G+RIGTPA+T+RG   ++   + E + RA+
Sbjct:  277 PEFKEYSRLVVENAKRLAEALARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRAL 385          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P F+ Y +QV  NA AL   L  +G  LV+GGT+NHL+L D+RP+GLTG + E+L D   +TVNKNA+ +   S     G+RIGTPA+T+RG+ E +  +I E +
Sbjct:  280 PEFREYQQQVVNNAKALAEELKKQGLRLVSGGTDNHLMLVDVRPVGLTGKRAEQLLDEIGVTVNKNAIPYDPESPNVTSGIRIGTPAVTTRGMKEGEMAEIAEII 384          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_SYNAS (Serine hydroxymethyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=glyA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 405
            FK Y  Q+  NA AL   L G+GY LV+GGT+NHL+L DL   GLTG + ++  D   ITVNKN + F     +   G+RIGTPA+TSRG+ E++   I   +   +         + +++E G+L ++F
Sbjct:  278 FKDYQSQIVKNAQALAKELIGRGYRLVSGGTDNHLLLMDLTDKGLTGKEAQESLDSAGITVNKNGIPFDTRGPMVTSGIRIGTPALTSRGMKEEEMRTIARLIAEVLEHRDNEKHLMAVKEEVGRLCQNF 407          
The following BLAST results are available for this feature:
BLAST of CX290628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DEIRA6.945e-2145.87Serine hydroxymethyltransferase OS=Deinococcus rad... [more]
GLYA_CLOPH6.945e-2144.26Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA_CALS86.945e-2146.30Serine hydroxymethyltransferase OS=Caldicellulosir... [more]
GLYA_SILST9.071e-2146.79Serine hydroxymethyltransferase OS=Silicibacter sp... [more]
GLYA_DESVV9.071e-2143.18Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_DESVH9.071e-2143.18Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_THET81.185e-2046.79Serine hydroxymethyltransferase OS=Thermus thermop... [more]
GLYA_THET21.185e-2046.79Serine hydroxymethyltransferase OS=Thermus thermop... [more]
GLYA_CARHZ1.185e-2047.62Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA_SYNAS2.021e-2040.00Serine hydroxymethyltransferase OS=Syntrophus acid... [more]

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Properties
Property NameValue
Genbank descriptionC01002G07Rv Veg1 Citrus clementina cDNA clone C01002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290628 ID=CX290628; Name=CX290628; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCNNNNNNNNNNNNNNNNNNNNCCCCTGCATTCAAGGCCTATGC
GAAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCA
AGGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGG
GATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGA
CCTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTG
CCTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGA
GGTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGC
TGTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGG
ACTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCT
GATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTC
CGAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTA
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