CX290628

Overview
NameCX290628
Unique NameCX290628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:996..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_RICM5 (Serine hydroxymethyltransferase OS=Rickettsia massiliae (strain Mtu5) GN=glyA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 57/143 (39.86%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 456
            P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +                  G ++ D   GL NN+D   L+  V
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKFAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLV------------------GYMVADILDGLKNNEDNSDLEQKV 405          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_HYPME (Serine hydroxymethyltransferase OS=Hyphomicrobium methylovorum GN=glyA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 51/105 (48.57%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FK Y KQV  NA ALG  L   G++LV+GGT+ HLVL DLRP  LTG K EK     NIT NKN + F     +   G+R+G+PA T+RG    +F++IG  +
Sbjct:  293 PDFKVYIKQVMDNARALGEVLVQNGFALVSGGTDTHLVLVDLRPKKLTGTKAEKALGRANITCNKNGIPFDPEKPMVTSGIRLGSPAGTTRGFGVAEFQEIGRLI 397          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CLOTH (Serine hydroxymethyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glyA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            FK Y +Q+  NA  L N L  KG  LV+GGT+NHL+L DLR  GLTG  V+ + D   ITVNKN + F   S     G+RIGTPA+T+RG+ E+D  +I + ++  +T
Sbjct:  281 FKQYQQQIVKNAKTLANALMEKGIDLVSGGTDNHLMLVDLRNKGLTGKYVQHILDEVCITVNKNGIPFDPESPFVTSGIRIGTPAVTARGMKEEDMVEIADLINLTIT 388          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            P FKAYA+Q+K NA A+        Y +V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+R+GTPAMT+RG+   + E+I EF+ R ++
Sbjct:  297 PEFKAYAQQIKDNAAAMAAKFLAADYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMKVAEAEKIVEFIDRVIS 406          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_BACHD (Serine hydroxymethyltransferase OS=Bacillus halodurans GN=glyA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 55/114 (48.25%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 369
            P FK+Y + +  NA  LG  LT +G  LV+GGT+NHL+L DLR LGLTG   EK  D   IT NKN + F   S     G+RIGT A+TSRGL E+  ++IG      + LTL+
Sbjct:  276 PEFKSYGEAIIRNAKRLGEKLTSEGIDLVSGGTDNHLLLLDLRSLGLTGKVAEKALDDVGITTNKNTIPFDPESPFVTSGIRIGTAAVTSRGLDEEAMDEIG----ATIALTLK 385          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA2_RALSO (Serine hydroxymethyltransferase 2 OS=Ralstonia solanacearum GN=glyA2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FK Y   V ANA ALG  L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +FEQIG  +
Sbjct:  285 PEFKTYIDSVLANAKALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTITSGIRLGTPAATTRGFGVAEFEQIGRLI 389          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 354
            P+F  Y +QV  NA A+G  L  +GY LV+ GT+NHLVL DLR  GLTG + E+  +   IT NKN V F D S     G+R+GTPAMT+RG    +F  + E + R +
Sbjct:  293 PSFAEYTQQVVDNAQAMGAELRERGYDLVSDGTDNHLVLIDLRNKGLTGKEAEQALEAAGITANKNMVPFDDKSPFVTSGLRLGTPAMTTRGFGPDEFAHVAEMIDRVL 401          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_NITWN (Serine hydroxymethyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glyA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 56/121 (46.28%), Postives = 70/121 (57.85%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK 390
            P FK YAK V  NA AL   L G G+ +V+GGT+NHL+L DLRP GL GN  EK      +T NKN + F         G+R+GTPA T+RG    +F+Q+G  +  A  LT   Q E GK
Sbjct:  292 PDFKIYAKNVVENARALAESLRGHGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGLTCNKNGIPFDPEKPFVTSGLRLGTPATTTRGFGVSEFKQVGGLI--AEVLTAIAQAEDGK 410          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP7 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glyA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FK Y+ QV ANA AL N L  +G+ +V+ GTENHL+L DLR +G+TG + ++L    NIT NKN + F   S     G+R+G+PAMT+RG+ E +F +I   +
Sbjct:  282 PEFKTYSGQVIANAQALANGLIKRGFKIVSNGTENHLMLVDLRSIGMTGKQADQLVSEVNITANKNTLPFDPESPFVTSGLRLGSPAMTTRGMKEAEFIEIANII 386          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAD (Serine hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glyA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FK YA Q++ NA AL   L  +G +LV+GGT+NHL+L DLR  GLTG + ++  D   ITVNKNA+  D    +   G+RIGTPA+T+RG+ E++  QI  ++
Sbjct:  277 PEFKQYAAQIRRNAKALAEGLHAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREREMAQIAAWI 381          
The following BLAST results are available for this feature:
BLAST of CX290628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_RICM52.021e-2039.86Serine hydroxymethyltransferase OS=Rickettsia mass... [more]
GLYA_HYPME2.021e-2048.57Serine hydroxymethyltransferase OS=Hyphomicrobium ... [more]
GLYA_CLOTH2.021e-2047.22Serine hydroxymethyltransferase OS=Clostridium the... [more]
GLYA_CHLP82.021e-2046.36Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_BACHD2.021e-2048.25Serine hydroxymethyltransferase OS=Bacillus halodu... [more]
GLYA2_RALSO2.021e-2049.52Serine hydroxymethyltransferase 2 OS=Ralstonia sol... [more]
GLYA_SALRD2.639e-2046.79Serine hydroxymethyltransferase OS=Salinibacter ru... [more]
GLYA_NITWN2.639e-2046.28Serine hydroxymethyltransferase OS=Nitrobacter win... [more]
GLYA_CYAP72.639e-2046.67Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_CHLAD2.639e-2047.62Serine hydroxymethyltransferase OS=Chloroflexus ag... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01002G07Rv Veg1 Citrus clementina cDNA clone C01002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290628 ID=CX290628; Name=CX290628; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCNNNNNNNNNNNNNNNNNNNNCCCCTGCATTCAAGGCCTATGC
GAAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCA
AGGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGG
GATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGA
CCTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTG
CCTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGA
GGTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGC
TGTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGG
ACTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCT
GATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTC
CGAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTA
back to top