CX290628

Overview
NameCX290628
Unique NameCX290628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_THELT (Serine hydroxymethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 369
            F  Y KQV ANA  L N L+  G  +V+GGT+ HL+L DL PL +TG   EK  + C +TVNKN +  ++ S     G+RIGTPA+T+RG+ EK+ ++I E +   +   L+
Sbjct:  280 FVEYQKQVIANAKTLANELSSMGLRIVSGGTDTHLMLVDLTPLNVTGKAAEKALEKCGVTVNKNTIPNETRSPFVASGIRIGTPAVTTRGMREKEMKKIAELIFEVLKNVLD 391          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_RICBR (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain RML369-C) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P +K+Y KQV  NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F  +S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  281 PEYKSYIKQVIINAKALAGSLQERGYDILTGGTDNHIVLVDLRKDGITGKIAANSLDRAGITCNKNAIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVGHLI 385          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_RICB8 (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain OSU 85-389) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P +K+Y KQV  NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F  +S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  281 PEYKSYIKQVIINAKALAGSLQERGYDILTGGTDNHIVLVDLRKDGITGKIAANSLDRAGITCNKNAIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVGHLI 385          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLK 399
            FK Y KQV  NA  L + L   GY LV GG++NHL+L DL+  G+TG K E++ D  +ITVNKNAV  D        G+R+GTPA+T+RG  E + +++ + L + +T  LE Q+   K  K
Sbjct:  278 FKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVIT-GLEDQENLEKCKK 398          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_RICFE (Serine hydroxymethyltransferase OS=Rickettsia felis GN=glyA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 55/135 (40.74%), Postives = 75/135 (55.56%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD 432
            P +K+Y KQV +NA AL + L  +GY ++TGGT+NH+VL DL   G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D
Sbjct:  281 PEYKSYIKQVISNAKALASSLQERGYDILTGGTDNHIVLVDLCKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNED 397          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_PROVI (Serine hydroxymethyltransferase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 51/109 (46.79%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 354
            P F+ YA QV++NA A+       GY++V+GGT+NHL+L DLR   +TG  VE       ITVNKN V F D S     G+RIGT AMT+RG+ E D   I E + R +
Sbjct:  297 PEFRQYAMQVRSNAAAMSERFLSLGYNIVSGGTKNHLMLLDLRNKDITGKVVENTLHEAGITVNKNMVPFDDKSPFVTSGIRIGTAAMTTRGMNEDDSRLIAELIDRVI 405          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_PROA2 (Serine hydroxymethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 354
            P FK YA QV+ANA A+        Y++V+GGT+NHL+L DLR   +TG   E L     ITVNKN V F D S     G+RIGTPAMT+RG+ E   E I   + R +
Sbjct:  297 PEFKEYAVQVRANAAAMAQKFISLDYNIVSGGTKNHLMLIDLRNKNVTGKVAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMTESHAEAIVSLIDRVI 405          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_MYXXD (Serine hydroxymethyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 354
            P FKAY +Q+ ANA AL   L   G  L +GGT+NHL+L DLRP  LTG   E++ D   ITVNKN + F     +   GVR+GTPA+T+RG+ E +   +G  +  A+
Sbjct:  279 PEFKAYQRQIVANAKALAEALQRAGLRLTSGGTDNHLMLVDLRPKKLTGKVAEEVLDKAGITVNKNMIPFDPEKPMTTSGVRVGTPAITTRGMREAEMAVVGRLIGEAL 387          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_FERNB (Serine hydroxymethyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 54/138 (39.13%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALK 447
            FKAY  Q+  NA AL   L  +G  +V+GGT+ HL+L DL PL +TG   E     C+ITVNKN +  ++ S     G+R+GTPA+T+RG+ E+  E+I + +   VT+   ++ E G + ++  K  V+++ IE  K
Sbjct:  280 FKAYQNQIVKNAKALAKALENRGLRIVSGGTDTHLMLVDLNPLNVTGKAAETALGYCHITVNKNTIPNETRSPFVASGIRLGTPALTTRGMKEEQMEEIADLI---VTVLKNVKDEEGNVDEEVAK-RVSDRVIELCK 413          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.502e-20
Identity = 52/110 (47.27%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            P FK YA QV+ NA  +    +G  Y +V+GGT+NHL+L DLR   +TG   E L     ITVNKN V F D S     G+RIGTPAMT+RG+ E   E I  F+ R ++
Sbjct:  297 PEFKDYAVQVRNNAAVMAERFSGLDYQIVSGGTKNHLMLIDLRNKNVTGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMQESHAENIVGFIDRVIS 406          
The following BLAST results are available for this feature:
BLAST of CX290628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THELT3.447e-2043.75Serine hydroxymethyltransferase OS=Thermotoga lett... [more]
GLYA_RICBR3.447e-2047.62Serine hydroxymethyltransferase OS=Rickettsia bell... [more]
GLYA_RICB83.447e-2047.62Serine hydroxymethyltransferase OS=Rickettsia bell... [more]
GLYA_NATTJ3.447e-2044.26Serine hydroxymethyltransferase OS=Natranaerobius ... [more]
GLYA_RICFE4.502e-2040.74Serine hydroxymethyltransferase OS=Rickettsia feli... [more]
GLYA_PROVI4.502e-2046.79Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_PROA24.502e-2047.71Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_MYXXD4.502e-2045.87Serine hydroxymethyltransferase OS=Myxococcus xant... [more]
GLYA_FERNB4.502e-2039.13Serine hydroxymethyltransferase OS=Fervidobacteriu... [more]
GLYA_CHLPB4.502e-2047.27Serine hydroxymethyltransferase OS=Chlorobium phae... [more]

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Properties
Property NameValue
Genbank descriptionC01002G07Rv Veg1 Citrus clementina cDNA clone C01002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290628 ID=CX290628; Name=CX290628; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCNNNNNNNNNNNNNNNNNNNNCCCCTGCATTCAAGGCCTATGC
GAAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCA
AGGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGG
GATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGA
CCTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTG
CCTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGA
GGTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGC
TGTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGG
ACTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCT
GATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTC
CGAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTA
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