CX290628

Overview
NameCX290628
Unique NameCX290628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:996..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_PELLD (Serine hydroxymethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 51/110 (46.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            P F+ YA QV+ NA ++    T  GY++V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+RIGT AMT+RG+ E D   I E + R +T
Sbjct:  297 PEFREYAVQVRKNAASMAERFTSLGYNIVSGGTKNHLMLLDLRNKDVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRIGTAAMTTRGMKEADATLIAELIDRVIT 406          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_METPE (Serine hydroxymethyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 483
            P+FK Y++QV  NA AL   L   G  LV+GGT+NHL+L DL   GLTG + E       ITVNKN +  ++ S     G+RIGTPA+TSRG+ E +  QIGE++ R +                  K + +   I A+K +V   AS + +
Sbjct:  277 PSFKQYSRQVVKNAQALAETLGEAGLRLVSGGTDNHLILIDLSNRGLTGLEAEVALGKAGITVNKNTIPNENRSPFVTSGLRIGTPAVTSRGMKEDEMHQIGEYIIRVL------------------KDIQDEATISAVKNEVTALASRYSL 410          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_ROSS1 (Serine hydroxymethyltransferase OS=Roseiflexus sp. (strain RS-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            P F+ YA+QV  NA  L N L  +GY +++GGT+NHL+L DLR   ++G   ++  D   IT NKNAV   D S L   G+R+GTPA+T+RG+ E + EQI   +   +T
Sbjct:  296 PEFETYARQVIRNAQTLANALIARGYHVLSGGTDNHLMLIDLRNKAVSGKAAQEALDRAAITTNKNAVPNDDKSPLITSGIRLGTPALTTRGMKEPEMEQIAALIDDVIT 405          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_ROSCS (Serine hydroxymethyltransferase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 357
            P F+ YA+Q+  NA  L   L  +GY +++GGT+NHL+L DLR  G++G   ++  D   IT NKNAV   D S L   G+R+GTPA+T+RG+ E + EQI   +   +T
Sbjct:  296 PEFETYARQIIRNAQTLAGALMARGYHILSGGTDNHLMLIDLRNKGVSGKAAQEALDRAAITTNKNAVPNDDKSPLITSGIRLGTPALTTRGMKEPEMEQIAALIDDVIT 405          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_OCEIH (Serine hydroxymethyltransferase OS=Oceanobacillus iheyensis GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 393
            FKAY+KQ+ ANA  LG  L  +G  +V+GGT+NHL+L D+ PL LTG   EK  D   IT NKN + F   S     G+RIGT A+T+RG  E++ ++I       ++LTL+  ++  KL
Sbjct:  278 FKAYSKQIVANAKLLGEALNKEGIRIVSGGTDNHLLLLDVTPLQLTGKVAEKALDDIGITTNKNTIPFDQESPFVTSGIRIGTAAVTTRGFGEEEMKEIASI----ISLTLKHHEDEAKL 393          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 45/114 (39.47%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEI 372
            P F  Y ++V  N+  L + L   G  ++TGGT+NH++L DLR  G+ G  VE +CD   I++N+NA+ G+SS L+P G+R+GT A+T+RG   ++  ++G+ +   V L  E+
Sbjct:  303 PEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLCREM 416          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_BRASO (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P FKAYAK V  NA AL   L  +G+ +V+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  292 PEFKAYAKNVVENAKALAESLRAQGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGSLI 396          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_BORRA (Serine hydroxymethyltransferase OS=Borrelia recurrentis (strain A1) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 486
            FK Y  +V  N  A+  Y   +G  +V+GGT+NHL L DL  LG+TG   EK+ +  NIT+NKNA+ F   +     G+RIG PA+TSRGL   D  ++  F+ RA+                      +  ++  +K +V  F SSFDMP
Sbjct:  286 FKDYISRVIENTKAMAEYFISEGLRIVSGGTDNHLFLVDLSGLGITGADAEKILESVNITLNKNAIPFDSKNPSVASGIRIGAPAITSRGLNRDDSIKVAHFIIRALKTK-------------------STDELRKIKQEVIGFISSFDMP 417          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_BORDL (Serine hydroxymethyltransferase OS=Borrelia duttonii (strain Ly) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 56/151 (37.09%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   37 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 486
            FK Y  +V  N  A+  Y   +G  +V+GGT+NHL L DL  LG+TG   EK+ +  NIT+NKNA+ F   +     G+RIG PA+TSRGL   D  ++  F+ RA+                      +  ++  +K +V  F SSFDMP
Sbjct:  286 FKDYISRVIENTKAMAEYFISEGLRIVSGGTDNHLFLVDLSGLGITGADAEKILESVNITLNKNAIPFDSKNPSVASGIRIGAPAITSRGLNRDDSIKVAHFIIRALKTK-------------------STDELRKIKQEVIGFISSFDMP 417          
BLAST of CX290628 vs. ExPASy Swiss-Prot
Match: GLYA_CHLSY (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   31 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 342
            P F+ YA Q++ NA AL   L  +G +LV+GGT+NHL+L DLR  GLTG + ++  D   ITVNKNA+  D    +   G+RIGTPA+T+RG+ E +  QI  ++
Sbjct:  277 PEFRQYAAQIRRNARALAEGLMAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREPEMAQIAAWI 381          
The following BLAST results are available for this feature:
BLAST of CX290628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PELLD5.880e-2046.36Serine hydroxymethyltransferase OS=Pelodictyon lut... [more]
GLYA_METPE5.880e-2038.82Serine hydroxymethyltransferase OS=Methanosphaerul... [more]
GLYA_ROSS17.679e-2044.55Serine hydroxymethyltransferase OS=Roseiflexus sp.... [more]
GLYA_ROSCS7.679e-2043.64Serine hydroxymethyltransferase OS=Roseiflexus cas... [more]
GLYA_OCEIH7.679e-2044.17Serine hydroxymethyltransferase OS=Oceanobacillus ... [more]
GLYC_ENCCU1.003e-1939.47Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_BRASO1.003e-1947.62Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]
GLYA_BORRA1.003e-1937.09Serine hydroxymethyltransferase OS=Borrelia recurr... [more]
GLYA_BORDL1.003e-1937.09Serine hydroxymethyltransferase OS=Borrelia dutton... [more]
GLYA_CHLSY1.310e-1946.67Serine hydroxymethyltransferase OS=Chloroflexus au... [more]

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Properties
Property NameValue
Genbank descriptionC01002G07Rv Veg1 Citrus clementina cDNA clone C01002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290628 ID=CX290628; Name=CX290628; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCNNNNNNNNNNNNNNNNNNNNCCCCTGCATTCAAGGCCTATGC
GAAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCA
AGGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGG
GATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGA
CCTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTG
CCTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGA
GGTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGC
TGTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGG
ACTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCT
GATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTC
CGAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTA
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