CX290640

Overview
NameCX290640
Unique NameCX290640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.897e-40
Identity = 98/212 (46.23%), Postives = 130/212 (61.32%), Query Frame = 2
Query:   26 SNPLALVNRIDRASYPKN--STYNRRLDEEQGDFPNWVSAKNRKLLQAPRI-------NANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTN--KDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            SN L+ + +  R + PK   +T NRRL    G FP+WV  K+ + L+           + +++VA DGTGN+ T++EAIS A   S +R +IYVK GVY E I     K  I LIGDG   T ITG+ +   G +   +AT  ++G+GF+ARDI   NTAGP+  QA+AL V +D    YRC I GYQDTLY  + RQFYR+ DIYGTID+I
Sbjct:  180 SNSLSALPKQRRTTNPKTGGNTKNRRL---LGLFPDWVYKKDHRFLEDSSDGYDEYDPSESLVVAADGTGNFSTINEAISFAPNMSNDRVLIYVKEGVYDENIDIPIYKTNIVLIGDGSDVTFITGNRSVGDGWTTFRSATLAVSGEGFLARDIMITNTAGPEKHQAVALRVNADFVALYRCVIDGYQDTLYTHSFRQFYRECDIYGTIDYI 388          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.162e-39
Identity = 83/156 (53.21%), Postives = 111/156 (71.15%), Query Frame = 2
Query:  176 ANVIVAQDGTGNYRTVSEAISAASG------NRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            A+ +VA+DG+  +RT+++A++A S       NR +IY+KAGVY EKI  ++    I L+GDG   TI+T + N   G++  G+ATF ++GDGF ARDI F NTAGP   QA+AL V+SD ++FYRCS  GYQDTL+  +LRQFYRD  IYGTIDFI
Sbjct:  204 ADFVVARDGSATHRTINQALAAVSRMGKSRLNRVIIYIKAGVYNEKIEIDRHMKNIMLVGDGMDRTIVTNNRNVPDGSTTYGSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSLFYRCSFKGYQDTLFTHSLRQFYRDRHIYGTIDFI 359          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.162e-39
Identity = 88/173 (50.87%), Postives = 120/173 (69.36%), Query Frame = 2
Query:  119 FPNWVSAKNRKLLQAPRIN-ANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            FP+WV   +RKLLQ   I  A+ +VA DGTGN+ T+S+A+ AA   S  R+VI+VK GVY E  +I+  K  I ++GDG   T+ITG+ +   G +   +ATF ++G GFIARDI F NTAGP+  QA+A+   +D  VFYRC++ GYQDTLYA ++RQF+R+  I GT+DFI
Sbjct:  193 FPSWVKPGDRKLLQTDNITVADAVVAADGTGNFTTISDAVLAAPDYSTKRYVIHVKRGVYVENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVAIRSDTDLGVFYRCAMRGYQDTLYAHSMRQFFRECIITGTVDFI 365          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.162e-39
Identity = 96/218 (44.04%), Postives = 133/218 (61.01%), Query Frame = 2
Query:   26 SNPLALVNRI---DRASYP---KNSTY----NRRLDEEQGD-----FPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            SN LA++  +   D A++    K+ST+    NR+L E  GD     +P W+S  +R+LLQ   I A+  VA DG+G++ TV+ A++AA   S  RFVI++KAGVY+E +   K    I  +GDG+  TIITG  N   G++   +AT    G+ F+ARDI F NTAGP   QA+AL V SD + FY+C +  YQDTLY  + RQF+    I GT+DFI
Sbjct:  210 SNALAMIKNMTETDIANFELRDKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQGSTIKADATVADDGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYRENVEVTKKKTNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFI 427          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.837e-39
Identity = 86/197 (43.65%), Postives = 120/197 (60.91%), Query Frame = 2
Query:   44 VNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNR---FVIYVKAGVYKEKIRTNKDG--ITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            V+RI +       + +RRL  + G  P+WV+  +R+LL    +  N +VAQDG+G ++T+++A+          FVI+VKAGVYKE +   K+   +T+IGDG   T  TG  N   G +   TATF + G  F+A+DIGF NTAG    QA+AL V +D  +FY C + G+QDTLY  + RQFYRD  I GTIDF+
Sbjct:   87 VSRILKGFDTSQYSVSRRLLSDDG-IPSWVNDGHRRLLAGGNVQPNAVVAQDGSGQFKTLTDALKTVPPKNAVPFVIHVKAGVYKETVNVAKEMNYVTVIGDGPTKTKFTGSLNYADGINTYNTATFGVNGANFMAKDIGFENTAGTGKHQAVALRVTADQAIFYNCQMDGFQDTLYVQSQRQFYRDCSISGTIDFV 282          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.837e-39
Identity = 87/176 (49.43%), Postives = 118/176 (67.05%), Query Frame = 2
Query:  113 GDFPNWVSAKNRKLLQAPR--INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKDGITL--IGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            G  P WVS+++RKL+++    I AN +VAQDGTG+Y+T++EA++AA   +  R+VIYVK G+YKE +   K  + L  +GDG   TIITG  N   G++ P   T    G GFI +DI   NTAGP+ +QA+AL V +D +V  RC I  YQDTLYA + RQFYRD+ + GT+DFI
Sbjct:  208 GKMPYWVSSRDRKLMESSGKDIIANRVVAQDGTGDYQTLAEAVAAAPDKNKTRYVIYVKMGIYKENVVVTKKKMNLMIVGDGMNATIITGSLNVVDGSTFPSN-TLAAVGQGFILQDICIQNTAGPEKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFI 382          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.837e-39
Identity = 91/204 (44.61%), Postives = 121/204 (59.31%), Query Frame = 2
Query:   26 SNPLALVNRI-DRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAI---SAASGNRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            SN LA+V ++  + S  +     RRL      FPNWV    R+LLQA  +  +V VA DG+G+ RTV+EA+          FVIYVKAG Y E +   KD   + + GDG+  TII+G  N   G     T+TF   G GF+ +D+G  NTAGP+  QA+A    SD +V+YRCS  GYQDTLY  + RQ+YR+ D+ GT+DFI
Sbjct:  609 SNSLAIVAQVLKKPSKSRIPVQGRRL-LNSNSFPNWVRPGVRRLLQAKNLTPHVTVAADGSGDVRTVNEAVWRVPKKGKTMFVIYVKAGTYVENVLMKKDKWNVFIYGDGRDKTIISGSTNMVDGVRTFNTSTFATEGKGFMMKDMGIINTAGPEKHQAVAFRSDSDRSVYYRCSFDGYQDTLYTHSNRQYYRNCDVTGTVDFI 811          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 93/211 (44.08%), Postives = 128/211 (60.66%), Query Frame = 2
Query:   26 SNPLALV-NRID-------RASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            SN LA++ N  D       + S P N   NR+L E+ G++P W+SA +R+LLQ+  +  +V+VA DG+G+Y+TVSEA+  A   S  R+VI +KAGVY+E +     K  I  +GDGK  TIIT   N + G++   +AT        +ARDI F NTAG    QA+AL V SD + FYRC +  YQDTLY  + RQF+    + GT+DFI
Sbjct:  216 SNALAMICNMTDTDIANEMKLSAPAN---NRKLVEDNGEWPEWLSAGDRRLLQSSTVTPDVVVAADGSGDYKTVSEAVRKAPEKSSKRYVIRIKAGVYRENVDVPKKKTNIMFMGDGKSNTIITASRNVQDGSTTFHSATVVRVAGKVLARDITFQNTAGASKHQAVALCVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGTVDFI 423          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 84/178 (47.19%), Postives = 118/178 (66.29%), Query Frame = 2
Query:  101 DEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            ++E   FP+WV   +RKLL++     +V VA DGTGN+  + +AI  A   S  RFVIY+K G+Y E  +I+  K  I ++GDG   T+I+G+ +   G +   +ATF ++G GF+ARDI F NTAGP+  QA+AL   SD +VF+RC++ GYQDTLY   +RQFYR+  I GT+DFI
Sbjct:  186 EDESLQFPDWVRPDDRKLLESNGRTYDVSVALDGTGNFTKIMDAIKKAPDYSSTRFVIYIKKGLYLENVEIKKKKWNIVMLGDGIDVTVISGNRSFIDGWTTFRSATFAVSGRGFLARDITFQNTAGPEKHQAVALRSDSDLSVFFRCAMRGYQDTLYTHTMRQFYRECTITGTVDFI 363          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 87/208 (41.83%), Postives = 132/208 (63.46%), Query Frame = 2
Query:   29 NPLALV----NRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAP--RINANVIVAQDGTGNYRTVSEAISAASGNR---FVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            N LA+V    N + +   P+ ++  RRL  ++  FP+W+ A+ R+LL AP   +  +++VAQDG+G Y+T++EA++     +   FV+++K G+YKE ++ N+    +  IGDG   T+I+G  + + G +   TAT  I GD FIA++I F NTAG    QA+A+ V +D ++FY C   GYQDTLYA + RQFYRD  I GTIDF+
Sbjct:  200 NGLAMVTEMSNYLGQMQIPEMNS--RRLLSQE--FPSWMDARARRLLNAPMSEVKPDIVVAQDGSGQYKTINEALNFVPKKKNTTFVVHIKEGIYKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIAKNIAFENTAGAIKHQAVAIRVLADESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFL 403          
The following BLAST results are available for this feature:
BLAST of CX290640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME12_ARATH8.897e-4046.23Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME36_ARATH1.162e-3953.21Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME32_ARATH1.162e-3950.87Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME2_ARATH1.162e-3944.04Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME_MEDSA9.837e-3943.65Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME3_SOLLC9.837e-3949.43Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME26_ARATH9.837e-3944.61Putative pectinesterase/pectinesterase inhibitor 2... [more]
PMEU1_SOLLC2.191e-3844.08Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME44_ARATH2.191e-3847.19Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME28_ARATH2.191e-3841.83Putative pectinesterase/pectinesterase inhibitor 2... [more]

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Properties
Property NameValue
Genbank descriptionC01010C01SK Veg1 Citrus clementina cDNA clone C01010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290640 ID=CX290640; Name=CX290640; organism=Citrus clementina; type=EST; length=620bp
CNNNNNNNNNNNNNNNNNNNNNNNNAGTAATCCTTTAGCCCTTGTCAACA
GGATAGACAGGGCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTA
GATGAGGAACAAGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAA
ACTGCTGCAGGCCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATG
GAACTGGCAATTATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGA
AATCGTTTTGTGATTTATGTGAAGGCAGGTGTTTATAAGGAGAAAATTCG
AACTAACAAGGACGGTATTACTTTGATAGGAGATGGCAAATACACTACTA
TTATTACTGGTGATGATAATGCTCGTAGAGGCACTTCCATGCCTGGCACC
GCCACTTTCACAATCACAGGTGATGGATTTATCGCACGAGATATCGGATT
TCATAACACAGCAGGACCCCAAGGAGAGCAAGCATTAGCTCTAAACGTAG
CCTCAGATCATACGGTCTTTTACAGGTGCAGCATTGCAGGCTACCAAGAC
ACACTATACGCCCTCGCTCTGCGTCAGTTCTACAGAGACACCGACATCTA
CGGGACCATCGACTTCATAT
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