CX290640

Overview
NameCX290640
Unique NameCX290640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 90/209 (43.06%), Postives = 132/209 (63.16%), Query Frame = 2
Query:   29 NPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLL-QAPR---INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNA---RRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            +PL  +N +++     +S  +R L EE G+FP WV+  +R+LL + PR   I ANV+VA+DG+G  +T+++A++     +  +FVI++K GVYKEK+   K    +  +GDG   T+ITGD      + GT    TA+  + GD F+A+DIGF NTAG    QA+AL V++D  VF+ C + GYQDTLY    RQFYR+  + GTIDF+
Sbjct:  342 DPLRKLNPLNKL----DSLKDRHLSEE-GEFPPWVTPHSRRLLARRPRNNGIKANVVVAKDGSGKCKTIAQALAMVPMKNTKKFVIHIKEGVYKEKVEVTKKMLHVMFVGDGPTKTVITGDIAFLPDQVGTYR--TASVAVNGDYFMAKDIGFENTAGAARHQAVALRVSADFAVFFNCHMNGYQDTLYVHTHRQFYRNCRVSGTIDFV 543          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 93/209 (44.50%), Postives = 120/209 (57.42%), Query Frame = 2
Query:   26 SNPLALVNRIDRASYPKNSTYNRRL------DEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            SN LA+V++I  A        +RR        ++  DF  W     R+LLQ   +  +V VA DGTG+  TV+EA++     S   FVIYVK+G Y E +  +K    + + GDGK  TII+G  N   GT    TATF I G GFI +DIG  NTAG    QA+A    SD +V+Y+CS  G+QDTLY  + RQFYRD D+ GTIDFI
Sbjct:  226 SNSLAIVSKILSALSDLGIPIHRRRRLMSHHHQQSVDFEKWA---RRRLLQTAGLKPDVTVAGDGTGDVLTVNEAVAKVPKKSLKMFVIYVKSGTYVENVVMDKSKWNVMIYGDGKGKTIISGSKNFVDGTPTYETATFAIQGKGFIMKDIGIINTAGAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYRDCDVTGTIDFI 431          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 79/166 (47.59%), Postives = 102/166 (61.45%), Query Frame = 2
Query:  137 AKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNR---FVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            A  R+LLQ      N  VA DG+G Y+T+ EA+ A        F+I++KAGVYKE I   K    + LIG+G   T ITG+ + + G S   T T  + G  F+A++IGF NTAGP+ EQA+AL V++D  + Y C I GYQDTLY    RQFYRD  I GT+DFI
Sbjct:   44 ATARRLLQISNAKPNATVALDGSGQYKTIKEALDAVPKKNTEPFIIFIKAGVYKEYIDIPKSMTNVVLIGEGPTKTKITGNKSVKDGPSTFHTTTVGVNGANFVAKNIGFENTAGPEKEQAVALRVSADKAIIYNCQIDGYQDTLYVHTYRQFYRDCTITGTVDFI 209          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME24_ARATH (Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 79/165 (47.88%), Postives = 109/165 (66.06%), Query Frame = 2
Query:  146 RKLLQAPRIN--ANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            R+LLQ+  +   A+++VA+DG+G YRT+  A+      S  R +IYVK GVY E ++  K    + ++GDG+  +I++G  N   GT    TATF + G GF+ARD+GF NTAGP   QA+AL V++D T FYRC++  YQDTLY  A RQFYR+  I GT+DFI
Sbjct:  242 RRLLQSTDLRKVADIVVAKDGSGKYRTIKRALQDVPEKSEKRTIIYVKKGVYFENVKVEKKMWNVIVVGDGESKSIVSGRLNVIDGTPTFKTATFAVFGKGFMARDMGFINTAGPSKHQAVALMVSADLTAFYRCTMNAYQDTLYVHAQRQFYRECTIIGTVDFI 406          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 86/186 (46.24%), Postives = 114/186 (61.29%), Query Frame = 2
Query:   89 NRRLDEEQGDFPNWVSAKNRKLL----QAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            N  L+    + P+W+S  ++K L    +A +  A+V+VA+DGTG Y TV+ AI+AA   S  RF+IY+K G+Y E   I   K  +TLIGDG+ +TIITG+ +A        TATF   G GFI  D+ F NT GP    A+AL V+ D +V YRC + GYQD LY    RQFYR+  I GT+DFI
Sbjct:  181 NTELNSVVPNSPSWLSHVDKKDLYLNAEALKKIADVVVAKDGTGKYNTVNAAIAAAPQHSHKRFIIYIKTGIYDEIVAIENTKPNLTLIGDGQDSTIITGNLSASNVRRTFYTATFASNGKGFIGVDMCFRNTVGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHIDRQFYRECFITGTVDFI 366          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME46_ARATH (Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 77/167 (46.11%), Postives = 110/167 (65.87%), Query Frame = 2
Query:  140 KNRKLLQAPRIN--ANVIVAQDGTGNYRTVSEAISAASGNR---FVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            + R+LL++  +   A ++VA+DG+G YRT+ EA++          +IYVK GVY E +R  K    + ++GDG+  TI++   N   GT    TATF + G GF+ARD+GF NTAGP   QA+AL V++D +VFY+C++  +QDT+YA A RQFYRD  I GT+DFI
Sbjct:  242 EGRRLLESGDLKKKATIVVAKDGSGKYRTIGEALAEVEEKNEKPTIIYVKKGVYLENVRVEKTKWNVVMVGDGQSKTIVSAGLNFIDGTPTFETATFAVFGKGFMARDMGFINTAGPAKHQAVALMVSADLSVFYKCTMDAFQDTMYAHAQRQFYRDCVILGTVDFI 408          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 83/171 (48.54%), Postives = 107/171 (62.57%), Query Frame = 2
Query:  122 PNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            P+W+   ++K L      A+V+VA+DGTG Y TV+ AI+AA   S  RFVIY+K G+Y E   I   K  +TLIGDG+  TIITG+ +A        TAT    G+GFI  D+ F NTAGP    A+AL V+ D +V YRC + GYQD LY  + RQFYR+  I GT+DFI
Sbjct:  169 PSWLFHVDKKDLYLNAEIADVVVAKDGTGKYSTVNAAIAAAPQHSQKRFVIYIKTGIYDEIVVIENTKPNLTLIGDGQDLTIITGNLSASNVRRTYNTATVASNGNGFIGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYRECFITGTVDFI 339          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 77/159 (48.43%), Postives = 104/159 (65.41%), Query Frame = 2
Query:  158 QAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            Q+  +  NV+VA DG+G+Y+TVSEA++AA   S  R+VI +KAGVY+E +     K  I  +GDG+ +TIIT   N + G++   +AT    G GF+ARDI F NTAG    QA+AL V SD + FYRC I  YQD+LY  + RQF+ +  I GT+DFI
Sbjct:    1 QSSTVTPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFI 159          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.625e-33
Identity = 72/154 (46.75%), Postives = 101/154 (65.58%), Query Frame = 2
Query:  182 VIVAQDGTGNYRTVSEAISAASGNR------FVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            V V+QDGTGN+  ++ A++AA  N       F+IYV AG+Y+E   I  NK  + +IGDG   T++TG+ +   G +   +ATF +T   F+A +I F NTAGP+  QA+AL   +D ++FY CS   YQDTLY  +LRQFYR+ D+YGT+DFI
Sbjct:  265 VTVSQDGTGNFTNITAAVAAAPNNTDGSAGFFLIYVTAGIYEEYISIAKNKRYMMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVTAPNFVAVNITFRNTAGPEKHQAVALRSGADFSIFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFI 418          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.620e-33
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 2
Query:  182 VIVAQDGTGNYRTVSEAISAA------SGNRFVIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            V V Q+GTGN+ T++EA+++A      +   FVIYV +GVY+E   I  NK  + +IGDG   T++TG+ N   G +   +ATF +T   F+A ++ F NTAGP+  QA+A+  ++D ++FY CS   YQDTLY  +LRQFYR+ DIYGT+DFI
Sbjct:  259 VTVNQNGTGNFTTITEAVNSAPNKTDGTAGYFVIYVTSGVYEENVVIAKNKRYLMMIGDGINRTVVTGNRNVVDGWTTFNSATFAVTSPNFVAVNMTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFI 412          
The following BLAST results are available for this feature:
BLAST of CX290640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME43_ARATH3.499e-3643.06Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME1_ARATH3.499e-3644.50Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME_PETIN1.329e-3547.59Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME24_ARATH2.268e-3547.88Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME42_ARATH1.125e-3446.24Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME46_ARATH1.470e-3446.11Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME30_ARATH1.920e-3448.54Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME_DAUCA3.275e-3448.43Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME7_ARATH1.625e-3346.75Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME41_ARATH3.620e-3346.75Probable pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionC01010C01SK Veg1 Citrus clementina cDNA clone C01010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290640 ID=CX290640; Name=CX290640; organism=Citrus clementina; type=EST; length=620bp
CNNNNNNNNNNNNNNNNNNNNNNNNAGTAATCCTTTAGCCCTTGTCAACA
GGATAGACAGGGCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTA
GATGAGGAACAAGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAA
ACTGCTGCAGGCCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATG
GAACTGGCAATTATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGA
AATCGTTTTGTGATTTATGTGAAGGCAGGTGTTTATAAGGAGAAAATTCG
AACTAACAAGGACGGTATTACTTTGATAGGAGATGGCAAATACACTACTA
TTATTACTGGTGATGATAATGCTCGTAGAGGCACTTCCATGCCTGGCACC
GCCACTTTCACAATCACAGGTGATGGATTTATCGCACGAGATATCGGATT
TCATAACACAGCAGGACCCCAAGGAGAGCAAGCATTAGCTCTAAACGTAG
CCTCAGATCATACGGTCTTTTACAGGTGCAGCATTGCAGGCTACCAAGAC
ACACTATACGCCCTCGCTCTGCGTCAGTTCTACAGAGACACCGACATCTA
CGGGACCATCGACTTCATAT
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