CX290640

Overview
NameCX290640
Unique NameCX290640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.728e-33
Identity = 83/175 (47.43%), Postives = 109/175 (62.29%), Query Frame = 2
Query:  122 PNWVSAKNRKLL----QAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            P+W+   ++K L    +A +  A+V+VA+DGTG Y TV+ AI+AA   S  RFVIY+K G+Y E   I   K  +TLIGDG+  TIIT + +A        TAT    G+GFI  D+ F NTAGP    A+AL V+ D +V YRC + GYQD LY  + RQFYR+  I GT+DFI
Sbjct:  192 PSWLFHVDKKDLYLNAEALKKIADVVVAKDGTGKYSTVNAAIAAAPQHSQKRFVIYIKTGIYDEIVVIENTKPNLTLIGDGQDLTIITSNLSASNVRRTFNTATVASNGNGFIGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYRECFITGTVDFI 366          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.797e-32
Identity = 79/170 (46.47%), Postives = 107/170 (62.94%), Query Frame = 2
Query:  146 RKLLQ----APRINANVIVAQDGTGNYRTVSEAISAA------SGNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            RKLLQ    A +++  V V Q+GTGN+ T++ AI+AA      S   F+IYV AG+Y+E +    NK  + +IGDG   T+ITG+ +   G +   +ATF ++G  FI  +I   NTAGP   QA+AL    D +VFY CS   YQDTLY  +LRQFYR+ D+YGT+DFI
Sbjct:  230 RKLLQSDADAVQVSDIVTVIQNGTGNFTTINAAIAAAPNKTDGSNGYFLIYVTAGLYEEYVEVPKNKRYVMMIGDGINQTVITGNRSVVDGWTTFNSATFILSGPNFIGVNITIRNTAGPTKGQAVALRSGGDLSVFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFI 399          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.347e-32
Identity = 79/176 (44.89%), Postives = 113/176 (64.20%), Query Frame = 2
Query:  119 FPNWVSAKNRKLLQAPRI---NANVIVAQDGTGNYRTVSEAISAASG----NRFVIYVKAGVYKEKIRTNKDG--ITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            FP+WVS   R+LL +  +   + +++VAQD +G++R++  AI+ A+     +RFVIYVK GVY+E I    D   I L+GDG+  TIIT   + + G +   +AT    G  F+A+D+ F NTAGP   QA+A+  +SD +VFYR  I G+QDTLY  + RQF+R+  I GTIDFI
Sbjct:  257 FPSWVSRHERRLLVSASLAKSSPHLVVAQDRSGHFRSIQAAINFAARRRFKSRFVIYVKKGVYRENIDVGNDNHNIMLVGDGERKTIITSGRSVQHGYTTYNSATGGFGGQRFVAKDMTFINTAGPLRGQAVAVRSSSDLSVFYRVGIHGFQDTLYIHSQRQFFRECYISGTIDFI 432          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.065e-32
Identity = 79/197 (40.10%), Postives = 114/197 (57.87%), Query Frame = 2
Query:   92 RRL--DEEQGDFPNWVSAKNRKLLQ------------APRINANVIVAQDGTGNYRTVSEAISAASGN---RFVIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNAR--RGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            RRL  D ++   P WVS  +RKL+               R+  N +VA+DG+G ++TV +A+ A   N   R +IY+KAG+Y+E+  I   K+ I + GDG   T+I+ + +    RGT+   +AT  +  +GF+A+ +GF NTAGP G QA A+ V  D  V + C   GYQDTLY    RQFYR+  + GT+DFI
Sbjct:  233 RRLLEDIDETGIPTWVSGADRKLMAKAGRGRRGGRGGGARVRTNFVVAKDGSGQFKTVQQAVDACPENNRGRCIIYIKAGLYREQVIIPKKKNNIFMFGDGARKTVISYNRSVALSRGTTTSLSATVQVESEGFMAKWMGFKNTAGPMGHQAAAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNCVVSGTVDFI 429          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 83/205 (40.49%), Postives = 116/205 (56.59%), Query Frame = 2
Query:   92 RRL--DEEQGDFPNWVSAKNRKLLQ-----AP---------------RINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARR--GTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            RRL  D +    P W S K+RKL+      AP               +I A  +VA+DG+G ++T+SEA+ A    +  R +I++KAG+Y E++R    K+ I + GDG   TIIT D + +   GT+   + T  +  +GF+A+ IGF NTAGP G QA+AL V  D  V + C   GYQDTLY    RQFYR+  + GT+DFI
Sbjct:  225 RRLLEDNDSKGLPKWFSGKDRKLMAKAGRGAPAGGDDGIGEGGGGGGKIKATHVVAKDGSGQFKTISEAVMACPDKNPGRCIIHIKAGIYNEQVRIPKKKNNIFMFGDGATQTIITFDRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGPLGHQAVALRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFI 429          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.165e-31
Identity = 73/152 (48.03%), Postives = 97/152 (63.82%), Query Frame = 2
Query:  179 NVIVAQDGTGNYRTVSEAISAASGN---RFVIYVKAGVYKEKIRTNKDGITL--IGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            +V+VA+DG+GN+ TV  A++AA  +   RFVIY+K G Y E +  +K    L  IGDG   T I G+ +   G +   ++T  + G GFIAR I F N AGP   QA+AL   +D + FY+CS  GYQDTLY  +LRQFY + D+YGTIDFI
Sbjct:    9 DVVVAKDGSGNFTTVGAAVAAAKDSSTARFVIYIKEGAYFEYVDVDKKKTNLMFIGDGIGKTWIKGNRSVVDGWTTFRSSTVAVVGTGFIARGISFENYAGPSKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYSECDVYGTIDFI 160          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.165e-31
Identity = 74/154 (48.05%), Postives = 99/154 (64.29%), Query Frame = 2
Query:  182 VIVAQDGTGNYRTVSEAISAASGNRF------VIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            V V    T N+ T++EA++AA  + F      VIY +AG+Y+E   I   K  I LIGDG   TII+G+ +   G +   ++TF + GD F+A D+ F NTAGP+  QA+A+   +D + FYRCS  GYQDTLY  +LRQFYR+ DIYGTIDFI
Sbjct:  308 VTVGPYETDNFPTITEAVAAAPNHTFPEQGYFVIYARAGLYEEYVVISNKKRNIMLIGDGINKTIISGNHSFIDGWTTYNSSTFAVVGDRFVAVDVTFRNTAGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTIDFI 461          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 73/158 (46.20%), Postives = 101/158 (63.92%), Query Frame = 2
Query:  170 INANVIVAQDGTGNYRTVSEAISAASGNR------FVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            ++  VIV    + N+ T+++AI+AA  N       FVIY + GVY+E I    NK  + L+GDG   TIITG+ N   G +    ++F + G+ F+A D+ F NTAGP+  QA+AL   ++ + FYRCS  GYQDTLY  +LRQFYR+ DIYGT+DFI
Sbjct:  299 VSKAVIVGPFKSDNFTTITDAIAAAPNNTRPEDGYFVIYAREGVYEEYIVVPINKKNLMLMGDGINKTIITGNHNVVDGWTTYNCSSFAVVGERFMAVDVTFRNTAGPEKHQAVALRNNAEGSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFI 456          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 77/194 (39.69%), Postives = 115/194 (59.28%), Query Frame = 2
Query:   92 RRL--DEEQGDFPNWVSAKNRKLLQ---------APRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNARR--GTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            RRL  D ++   P WVS  +RKL+            RI A  +VA+DG+G ++TV +A++A    +  R +I++KAG+Y+E+  I   K+ I + GDG   T+I+ + + +   GT+   + T  +  +GF+A+ IGF NTAGP G QA+A+ V  D  V + C   GYQDTLY    RQFYR+  + GT+DFI
Sbjct:  243 RRLLEDIDETGIPTWVSGADRKLMTKAGRGSNDGGARIRATFVVAKDGSGQFKTVQQAVNACPEKNPGRCIIHIKAGIYREQVIIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFI 436          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 80/199 (40.20%), Postives = 111/199 (55.78%), Query Frame = 2
Query:  101 DEEQGDFPNWVSAKNRKLLQ------AP-------------RINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNK--DGITLIGDGKYTTIITGDDNA--RRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            D +Q   P W S K+RKL+       AP             +I    +VA+DG+G ++T+SEA+ A    +  R +IY+KAGVYKE++   K  + + + GDG   TIIT D +     GT+   + T  +  +GF+A+ IGF NTAGP G QA+A  V  D  V + C   GYQDTLY    RQFYR+  + GT+DFI
Sbjct:  227 DLDQKGLPKWHSDKDRKLMAQAGRPGAPADEGIGEGGGGGGKIKPTHVVAKDGSGQFKTISEAVKACPEKNPGRCIIYIKAGVYKEQVTIPKKVNNVFMFGDGATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGHQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFI 425          
The following BLAST results are available for this feature:
BLAST of CX290640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME19_ARATH4.728e-3347.43Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME20_ARATH1.797e-3246.47Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME33_ARATH2.347e-3244.89Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME4_ARATH3.065e-3240.10Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME37_ARATH5.228e-3240.49Probable pectinesterase/pectinesterase inhibitor V... [more]
PME_ACTDE1.165e-3148.03Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME47_ARATH1.165e-3148.05Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME25_ARATH1.521e-3146.20Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME5_ARATH1.987e-3139.69Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME_BRANA7.549e-3140.20Probable pectinesterase/pectinesterase inhibitor O... [more]

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Properties
Property NameValue
Genbank descriptionC01010C01SK Veg1 Citrus clementina cDNA clone C01010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290640 ID=CX290640; Name=CX290640; organism=Citrus clementina; type=EST; length=620bp
CNNNNNNNNNNNNNNNNNNNNNNNNAGTAATCCTTTAGCCCTTGTCAACA
GGATAGACAGGGCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTA
GATGAGGAACAAGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAA
ACTGCTGCAGGCCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATG
GAACTGGCAATTATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGA
AATCGTTTTGTGATTTATGTGAAGGCAGGTGTTTATAAGGAGAAAATTCG
AACTAACAAGGACGGTATTACTTTGATAGGAGATGGCAAATACACTACTA
TTATTACTGGTGATGATAATGCTCGTAGAGGCACTTCCATGCCTGGCACC
GCCACTTTCACAATCACAGGTGATGGATTTATCGCACGAGATATCGGATT
TCATAACACAGCAGGACCCCAAGGAGAGCAAGCATTAGCTCTAAACGTAG
CCTCAGATCATACGGTCTTTTACAGGTGCAGCATTGCAGGCTACCAAGAC
ACACTATACGCCCTCGCTCTGCGTCAGTTCTACAGAGACACCGACATCTA
CGGGACCATCGACTTCATAT
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