CX290640

Overview
NameCX290640
Unique NameCX290640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 80/199 (40.20%), Postives = 111/199 (55.78%), Query Frame = 2
Query:  101 DEEQGDFPNWVSAKNRKLLQ------AP-------------RINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNK--DGITLIGDGKYTTIITGDDNA--RRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            D +Q   P W S K+RKL+       AP             +I    +VA+DG+G ++T+SEA+ A    +  R +IY+KAGVYKE++   K  + + + GDG   TIIT D +     GT+   + T  +  +GF+A+ IGF NTAGP G QA+A  V  D  V + C   GYQDTLY    RQFYR+  + GT+DFI
Sbjct:  214 DLDQKGLPKWHSDKDRKLMAQAGRPGAPADEGIGEGGGGGGKIKPTHVVAKDGSGQFKTISEAVKACPEKNPGRCIIYIKAGVYKEQVTIPKKVNNVFMFGDGATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGNQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFI 412          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.273e-27
Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 2
Query:  170 INANVIVAQDGTGNYRTVSEAISAASGN----RFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARR-GTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            +  +V V +DG   Y+TV +A++AA  +    +FVI +  GVY+E +     K  +  IGDG   T+ITG  NA   G +   TAT  + GDGF+ARD+ F NTAGP   QA+A    SD ++   C   G QDTLYA  LRQFY++  I G +DFI
Sbjct:  237 LKEDVTVCKDGKCGYKTVQDAVNAAPEDNGMRKFVIKISEGVYEENVIVPFEKKNVVFIGDGMGKTVITGSLNAGMPGITTYNTATVGVVGDGFMARDLTFQNTAGPDAHQAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFI 393          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 70/175 (40.00%), Postives = 98/175 (56.00%), Query Frame = 2
Query:  122 PNWVSAKNRKLL----QAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            P+W+S  ++K L    +  +   +++VA+D TGNY  V+ AI+AA   S  RFVIY+K  +Y E   I   K  +TLI DG+ +TIIT + ++        TATF   GDGFI  D+ F NT  P     + L V  D ++ YRC +  YQD LY    RQ YR+  +  T+DFI
Sbjct:   54 PSWLSHVDKKDLYLNDETLKKITDILVAKDVTGNYNIVNVAIAAAPQHSQKRFVIYIKTSIYVEIVVIGNMKSNLTLIADGQDSTIITFNLSSSNSKRTFNTATFASNGDGFIRVDMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYREYFLMDTVDFI 228          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.844e-24
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  170 INANVIVAQDGTGN--YRTVSEAISAASGN----RFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARR-GTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            +  +V V ++G  +  Y+TV EA+ +A       +FVI ++ GVY+E +R    K  +  IGDG   T+ITG  N  + G +   +AT  + GDGF+ARD+   NTAG    QA+A    SD +V   C   G QDTLYA +LRQFY+   I G +DFI
Sbjct:  285 LTEDVTVCKNGGKDCKYKTVQEAVDSAPDTNRTVKFVIRIREGVYEETVRVPFEKKNVVFIGDGMGKTVITGSLNVGQPGMTTFESATVGVLGDGFMARDLTIENTAGADAHQAVAFRSDSDFSVLENCEFLGNQDTLYAHSLRQFYKQCRIQGNVDFI 443          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.250e-17
Identity = 57/161 (35.40%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  182 VIVAQDGTGNYRTVSEAI-SAASGN--RFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARR----------GTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            V V+QDG+G+Y +V +AI S   GN  R VI +  G+Y++ +     K+ IT  G     T++T ++ A +          GT   G  +  + G+ FIA +I F N+A     QA+A+ V +D   FY C   G+QDTLY    +Q+ +D  I G++DFI
Sbjct:    7 VRVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPEITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFI 167          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 57/154 (37.01%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  188 VAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTA-----GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            V ++G  N+ TV  A+ A    S  R VI++ +G+Y EK  I   K  ITL G G   T I  +D A         AT  + G  F+A++I F N A     G  G QA+A+ +A D + F  C   G QDTL+    R +++D  I G+IDFI
Sbjct:   93 VDKNGCCNFTTVQSAVDAVGNFSQRRNVIWINSGMYYEKVVIPKTKPNITLQGQGFDITAIAWNDTAYSANGTFYCATVQVFGSQFVAKNISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFI 246          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.252e-16
Identity = 66/208 (31.73%), Postives = 104/208 (50.00%), Query Frame = 2
Query:   80 STYNRRLDEEQGDFPNWV------------SAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTN--KDGITLIGDGKYTTIITGDDNAR----RGTSMP--GTATFTITGDGFIARDIGFHNTA-----GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            +T + R    + +F  WV            +AKN KL  +  +  +    +   G++  + +AI +    +  R VI V AGVYKEK+     K  IT+ G+G   T +   D A+    +G  M    +A+F +    F+A++I F NT      G  G+QA+AL V++D+  F+ C + G QDTLY    R +Y+D  I G++DFI
Sbjct:   44 NTTSDRTQNPEDEFMKWVRFVGSLKHSVFKAAKN-KLFPSYTLTVH---KKSNKGDFTKIQDAIDSLPLINFVRVVIKVHAGVYKEKVSIPPLKAFITIEGEGAEKTTVEWGDTAQTPDSKGNPMGTYNSASFAVNSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFI 247          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 56/157 (35.67%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  179 NVIVAQDGTGNYRTVSEAI-SAASGN--RFVIYVKAGVYKEKIRTN--KDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGP-----QGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            N  V Q+G G+++T++EAI S  +GN  R +I +  GVYKEK+  +  K  ITL G      ++T D  A +  ++  +AT  +  D F+A +I   N+A       +G QAL++ ++ +   FY C   GYQDT+       F++D  I GT DFI
Sbjct:   42 NTNVKQNGRGHFKTITEAINSVRAGNTRRVIIKIGPGVYKEKVTIDRSKPFITLYGHPNAMPVLTFDGTAAQYGTVD-SATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFI 197          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.446e-15
Identity = 58/182 (31.87%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  125 NWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISA---ASGNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYT--TIITGDDNAR------RGTSMPGTATFTITGDGFIARDIGFHNT----AGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            NWV+        A  +   ++V ++G G+  TV  A+     ++  R  I++  G+Y+EK+    +K  I+ IG+  Y   T+I+  D A       +      TA+ +I  D F A  I F NT    AG QG QA+AL +  D  VFYR  + G QDTL+      ++    I G +DFI
Sbjct:   63 NWVTTNANANANATNVRRVIVVDKNGGGDSVTVQGAVDMVPDSNSQRVKIFILPGIYREKVIVPKSKPYISFIGNESYAGDTVISWSDKASDLGCDGKELGTYRTASVSIESDFFCATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFI 244          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 2
Query:  173 NANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQG------EQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            N ++IV  +G G+Y +V +AI A    + N  +++V+ G+YKE++    NK  I + G+GK  T+I   ++++       +ATF +  + F+A  I   N A P G       Q++A  VA+D   FY C+     +TL+    R +Y +  I G+IDFI
Sbjct:   43 NRSIIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKERVHIPENKPFIFMRGNGKGKTVI---ESSQSSVDNVASATFKVEANHFVAFGISIRNDA-PVGMAFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFI 198          
The following BLAST results are available for this feature:
BLAST of CX290640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME_BRACM7.549e-3140.20Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME51_ARATH2.273e-2743.31Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME57_ARATH6.190e-2540.00Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]
PME64_ARATH6.844e-2440.88Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME31_ARATH1.250e-1735.40Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME8_ARATH2.358e-1637.01Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME53_ARATH5.252e-1631.73Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME63_ARATH1.170e-1535.67Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PME62_ARATH4.446e-1531.87Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME67_ARATH7.584e-1532.50Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01010C01SK Veg1 Citrus clementina cDNA clone C01010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290640 ID=CX290640; Name=CX290640; organism=Citrus clementina; type=EST; length=620bp
CNNNNNNNNNNNNNNNNNNNNNNNNAGTAATCCTTTAGCCCTTGTCAACA
GGATAGACAGGGCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTA
GATGAGGAACAAGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAA
ACTGCTGCAGGCCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATG
GAACTGGCAATTATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGA
AATCGTTTTGTGATTTATGTGAAGGCAGGTGTTTATAAGGAGAAAATTCG
AACTAACAAGGACGGTATTACTTTGATAGGAGATGGCAAATACACTACTA
TTATTACTGGTGATGATAATGCTCGTAGAGGCACTTCCATGCCTGGCACC
GCCACTTTCACAATCACAGGTGATGGATTTATCGCACGAGATATCGGATT
TCATAACACAGCAGGACCCCAAGGAGAGCAAGCATTAGCTCTAAACGTAG
CCTCAGATCATACGGTCTTTTACAGGTGCAGCATTGCAGGCTACCAAGAC
ACACTATACGCCCTCGCTCTGCGTCAGTTCTACAGAGACACCGACATCTA
CGGGACCATCGACTTCATAT
back to top