CX290640

Overview
NameCX290640
Unique NameCX290640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.882e-14
Identity = 50/150 (33.33%), Postives = 73/150 (48.67%), Query Frame = 2
Query:  200 GTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKDGITLI--GDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTA-----GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            G GN+  V  AI      S ++ +I V +G Y+EK+  N++   L+  G G   T I  +D A+   +   + +F +    F A +I F N A     G    QA+AL +  D   FY C   G QDTL     R F+++  I G+IDFI
Sbjct:   97 GCGNFSNVQSAIDVVPDLSSSKTLIIVNSGSYREKVTVNENKTNLVIQGRGYQNTSIEWNDTAKSAGNTADSFSFVVFAANFTAYNISFKNNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECFIQGSIDFI 246          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 59/193 (30.57%), Postives = 94/193 (48.70%), Query Frame = 2
Query:  107 EQGDFPNWVSAKNRKLLQA-----PRINAN------VIVAQDGTGNYRTVSEAISA---ASGNRFVIYVKAGVYKEKIRTN--KDGITLIGD-GKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTA-----GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            ++   P W  A  +   Q      P + A       +IV Q+G G+++T++ AI +   A+ NR +I +  G+Y EK+  +  +  +TL+G  G  T +      A+ GT    +AT  +    F+A ++   NT+     G QG QALA+ +  D   FY C   G+QDTL       F+++  I GT DFI
Sbjct:   31 DRAQIPQWFMANVKPFSQRRGTLDPELEAAEASRRVIIVNQNGGGDFKTINAAIKSIPLANKNRVIIKLAPGIYHEKVTVDVGRPYVTLLGKPGAETNLTYAGTAAKYGTVE--SATLIVWATNFLAANLNIINTSPMPKPGTQG-QALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFI 220          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.385e-14
Identity = 55/160 (34.38%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  182 VIVAQDGTGNYRTVSEAISAASGNR---FVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAG-PQGEQ--------ALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            VIV Q G GN+ T+ +AI +   N    F I VKAG+Y+EKI     K  I ++G GK +T +  DD+A    S+  + TF    D  + + I F N+   P   +        A+A  +  D + FY    AG QDTL+    R ++    I G +DFI
Sbjct:   29 VIVDQSGHGNFTTIQKAIDSVPINNTHWFFINVKAGLYREKITIPQKKPFIVIVGAGKRSTRVEWDDHA----SLAQSPTFATLADNTVVKKITFANSYNFPSNGKINKNPRVPAVAAFIGGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFI 184          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.385e-14
Identity = 61/195 (31.28%), Postives = 92/195 (47.18%), Query Frame = 2
Query:   98 LDEEQGDFPNWVSAK-----NRKLLQAPRINAN------VIVAQDGTGNYRTVSEAISA---ASGNRFVIYVKAGVYKEKIRTN--KDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTA-----GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            + E +   P W          RK    P + A       + V Q G  N++T++EAI +    + NR +I +  GVY EK+  +  +  ITL+G     T++T    A +  ++  +AT  +  + F A  +   NTA     G QG QALA+ + +D   FY C   G+QDTL       F++D  I GT DFI
Sbjct:   28 IPENRAQIPQWFKTNVKPYSQRKGTLDPALEAAEAARQIITVNQKGGANFKTLNEAIKSIPTGNKNRVIIKLAPGVYNEKVTIDIARPFITLLGQPGAETVLTYHGTAAQYGTVE-SATLIVWAEYFQAAHLTIKNTAPMPKPGSQG-QALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFI 220          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 54/160 (33.75%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  182 VIVAQDGTGNYRTVSEAISAASGNR---FVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAG--PQGEQ-------ALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            V V Q G GN+ T+ +AI +   N    F I VKAG+Y+EKI+    K  I L+G GK  T +  DD+     S+  + TF+   D  + + I F N+     +G+        A+A  +  D + FY    AG QDTL+    R ++    I G +DFI
Sbjct:   34 VFVDQSGHGNFTTIQKAIDSVPINNRHWFFINVKAGLYREKIKIPYEKPFIVLVGAGKRLTRVEWDDHY----SVAQSPTFSTLADNTVVKSITFANSYNFPSKGKMNKNPRTPAVAALIGGDKSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFI 189          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.440e-13
Identity = 49/154 (31.82%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  188 VAQDGTGNYRTVSEAISAASGN---RFVIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTA-----GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            V+ +G G ++ V +AI A+ G+   + +I +  G+Y+E+  +  NK+ + + G G   T I  ++          + +  + G+ F A +I F NTA     G    QA+AL V  D   FY C   G QDTL     R F++   I G+IDFI
Sbjct:   44 VSLNGCGRFKRVQDAIDASIGSSQSKTLILIDFGIYRERFIVHENKNNLVVQGMGYSRTSIEWNNTTASSNGTFSSFSVAVFGEKFTAYNISFKNTAPAPNPGAVDAQAVALKVVGDKAAFYGCGFYGNQDTLLDQEGRHFFKGCFIEGSIDFI 197          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.186e-13
Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 2
Query:  161 APRINANVIVAQDGTGNYRTVSEAI-SAASGN--RFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGP-----QGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            APRI    I      G ++T+++AI S  +GN  R +I +  G YKEK+    NK  ITL+G      +IT D  A +  ++  +A+  I  D F+A +I   NTA       +G QAL++ ++ +   FY C   G+QDT+       F++D  + GT DFI
Sbjct:   63 APRI----INVNPKGGEFKTLTDAIKSVPAGNTKRVIIKMAPGEYKEKVTIDRNKPFITLMGQPNAMPVITYDGTAAKYGTVD-SASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFI 220          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 61/190 (32.11%), Postives = 97/190 (51.05%), Query Frame = 2
Query:   80 STYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAI-SAASGN--RFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGP-----QGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            +T+   L + +G  P  V+A+      APRI    I      G ++T+++AI S  +GN  R +I +  G Y+EK+    NK  ITL+G      +IT D  A +  ++  +A+  I  D F+A +I   NTA       +G QAL++ ++ +   FY C   G+QDT+       F++D  + GT DFI
Sbjct:   41 NTHVGPLAQRKGLDPALVAAE-----AAPRI----INVNPKGGEFKTLTDAIKSVPAGNTKRVIIKMAHGEYREKVTIDRNKPFITLMGQPNAMPVITYDGTAAKYGTVD-SASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFI 220          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 54/189 (28.57%), Postives = 90/189 (47.62%), Query Frame = 2
Query:  131 VSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNR--FVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITG--------DDNARRGTSMPGTATFTITGDGFIARDIGFHN--------------TAGPQGEQALALNV--ASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            ++A   +   A   NA V  +      ++T+++AI++A      FVI +K GVY E++   ++ + L G+ +   +I           D ++ GT+  G++T TI+   F A+ +   N              ++  +  QA+AL V  + D   F   S+ GYQDTLY    R F+ D  I GT+DFI
Sbjct:   15 IAASVHQAQAATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTITRNNLLLKGESRNGAVIAAATAAGTLKSDGSKWGTA--GSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFI 201          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 52/151 (34.44%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  188 VAQDGTGNYRTVSEAISAASGNR-----FVIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            V Q G G++  + EAI +   N      + I+VK G+Y+EK  I   K  ITL G     T +   D    G  +  + T TI    F+ R +   N  G  G +A+AL VA+D   FY C I  YQDTL       ++++  I G  DFI
Sbjct:   53 VDQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPYITLSGTQASNTFLIWSD----GEDILESPTLTIFASDFVCRFLTIQNKFGTAG-RAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEGATDFI 198          
The following BLAST results are available for this feature:
BLAST of CX290640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME15_ARATH2.882e-1433.33Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME49_ARATH6.420e-1430.57Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME55_ARATH8.385e-1434.38Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME50_ARATH8.385e-1431.28Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME29_ARATH1.868e-1333.75Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME14_ARATH2.440e-1331.82Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PPME1_ARATH3.186e-1334.36Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME48_ARATH7.099e-1332.11Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH1.581e-1228.57Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PME11_ARATH1.581e-1234.44Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC01010C01SK Veg1 Citrus clementina cDNA clone C01010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290640 ID=CX290640; Name=CX290640; organism=Citrus clementina; type=EST; length=620bp
CNNNNNNNNNNNNNNNNNNNNNNNNAGTAATCCTTTAGCCCTTGTCAACA
GGATAGACAGGGCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTA
GATGAGGAACAAGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAA
ACTGCTGCAGGCCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATG
GAACTGGCAATTATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGA
AATCGTTTTGTGATTTATGTGAAGGCAGGTGTTTATAAGGAGAAAATTCG
AACTAACAAGGACGGTATTACTTTGATAGGAGATGGCAAATACACTACTA
TTATTACTGGTGATGATAATGCTCGTAGAGGCACTTCCATGCCTGGCACC
GCCACTTTCACAATCACAGGTGATGGATTTATCGCACGAGATATCGGATT
TCATAACACAGCAGGACCCCAAGGAGAGCAAGCATTAGCTCTAAACGTAG
CCTCAGATCATACGGTCTTTTACAGGTGCAGCATTGCAGGCTACCAAGAC
ACACTATACGCCCTCGCTCTGCGTCAGTTCTACAGAGACACCGACATCTA
CGGGACCATCGACTTCATAT
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