CX290640

Overview
NameCX290640
Unique NameCX290640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.065e-12
Identity = 54/189 (28.57%), Postives = 90/189 (47.62%), Query Frame = 2
Query:  131 VSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNR--FVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITG--------DDNARRGTSMPGTATFTITGDGFIARDIGFHN--------------TAGPQGEQALALNV--ASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            ++A   +   A   NA V  +      ++T+++AI++A      FVI +K GVY E++   ++ + L G+ +   +I           D ++ GT+  G++T TI+   F A+ +   N              ++  +  QA+AL V  + D   F   S+ GYQDTLY    R F+ D  I GT+DFI
Sbjct:   15 IAASVHQAQAATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTPFVILIKNGVYNERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTA--GSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFI 201          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 60/197 (30.46%), Postives = 90/197 (45.69%), Query Frame = 2
Query:   77 NSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNR---FVIYVKAGVYKEKI--RTNKDGITLIGDGKYTTIITGDDNAR----RGTSMPG--TATFTITGDGFIARDIGFHNTA-----GPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            NST ++++         WV     K+         + V+ +G   +R+V +A+ +   N      I +  G Y+EK+     K  IT  G G+  T I   D A      G  +    TA+ T+  + F AR+I F NTA     G QG QA+A  ++ D   F  C   G QDTL   A R ++++  I G+IDFI
Sbjct:   37 NSTDDQQIQHHH--HRKWVGPSGHKV---------ITVSLNGHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYREKVVVPATKPYITFKGAGRDVTAIEWHDRASDLGANGQQLRTYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFI 222          
The following BLAST results are available for this feature:
BLAST of CX290640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PMEA_DICD32.065e-1228.57Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME68_ARATH2.697e-1230.46Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC01010C01SK Veg1 Citrus clementina cDNA clone C01010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290640 ID=CX290640; Name=CX290640; organism=Citrus clementina; type=EST; length=620bp
CNNNNNNNNNNNNNNNNNNNNNNNNAGTAATCCTTTAGCCCTTGTCAACA
GGATAGACAGGGCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTA
GATGAGGAACAAGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAA
ACTGCTGCAGGCCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATG
GAACTGGCAATTATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGA
AATCGTTTTGTGATTTATGTGAAGGCAGGTGTTTATAAGGAGAAAATTCG
AACTAACAAGGACGGTATTACTTTGATAGGAGATGGCAAATACACTACTA
TTATTACTGGTGATGATAATGCTCGTAGAGGCACTTCCATGCCTGGCACC
GCCACTTTCACAATCACAGGTGATGGATTTATCGCACGAGATATCGGATT
TCATAACACAGCAGGACCCCAAGGAGAGCAAGCATTAGCTCTAAACGTAG
CCTCAGATCATACGGTCTTTTACAGGTGCAGCATTGCAGGCTACCAAGAC
ACACTATACGCCCTCGCTCTGCGTCAGTTCTACAGAGACACCGACATCTA
CGGGACCATCGACTTCATAT
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