CX290641

Overview
NameCX290641
Unique NameCX290641
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2079..2713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290641 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.175e-12
Identity = 50/185 (27.03%), Postives = 89/185 (48.11%), Query Frame = 2
Query:   26 WDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARN 580
            W AI+++V++ V++YYP  + V+ D ELQAW  EI       ++   +   L TP +L++ +T I++  S  HAA N GQ+ +G + PN P++ R     +   D   K +L+        T P      + + +  ++S    D+  LG   +  + E+     +   F+  L ++   I  RN
Sbjct:  516 WAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEIFAQAFLGRESSGFPSRLCTPGELVKYLTAIIFNCSAQHAAFNSGQHDFGAWMPNAPSSMR-QPPPQTKGDTTMKSYLD--------TLPEVNTTCRNLLLFWLVSQEPKDQRPLGTYPDEHFTEE-APRQSIAAFQNCLAQISKDIRERN 690          
BLAST of CX290641 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.841e-12
Identity = 53/185 (28.65%), Postives = 86/185 (46.49%), Query Frame = 2
Query:   26 WDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARN 580
            W A++++VT+ + +YYP+ + VE D ELQ W  EI       ++   +   L+T  +LIE +T +++  S  HAAVN GQ  Y  + PN P++ R       P   +    L+      ++T P       V+ +L  L     D   LG   +  + E+     + E FR  L ++   I  RN
Sbjct:  506 WYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLGRESSGFPTCLRTIPELIEYVTMVMYTCSARHAAVNSGQLEYTSWMPNFPSSMR-----NPPMQTKGLTTLQ----TYMDTLPDVKTTCIVLLVLWTLCREPDDRRPLGHFPDIHFVEEGP-RRSIEAFRQNLNQISHNIRQRN 680          
BLAST of CX290641 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 54/185 (29.19%), Postives = 82/185 (44.32%), Query Frame = 2
Query:   26 WDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARN 580
            W+ I ++V   V+ +Y    +V+ D ELQAW  EI  VG    +   +    ++   L   +T  V+  +  HAA+N GQ  +  + PN P    C +    P+ ++     +     ++ + P   QA   MAI   LS   PD   LG   E  +   P   A   +FR  L +LE  I ARN
Sbjct:  468 WEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVGLCQAQDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQGQLDWYAWVPNAP----CTMRMPPPTTKE-----DVTMATVMGSLPDVRQACLQMAISWHLSRRQPDMVPLGHHKE-KYFSGPKPKAVLNQFRTDLEKLEKEITARN 642          
BLAST of CX290641 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 51/185 (27.57%), Postives = 86/185 (46.49%), Query Frame = 2
Query:   26 WDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARN 580
            W AI+ +V++ V+ YYP  + V  D+ELQAW  EI + G   ++      +L T + L++ +T +++  S  HAAV+  Q+    + PN P + +    T              PE   + T P+      V+  L +LS    D   LG   +  + E+ V   +   F+ KL+++   I  RN
Sbjct:  482 WSAIRSFVSEIVDIYYPSDASVRDDQELQAWVGEIFSEGFLSQESSGMPSLLDTQEALVQYVTMVIFTCSAKHAAVSASQFDSCVWMPNLPPSMQLPPPTSKGQ--------ASPE-GFIATLPAVNATCDVIIALWLLSKEPGDRRPLGHYPDEHFTEE-VPRRSIAAFQRKLIQISSGIRKRN 656          
BLAST of CX290641 vs. ExPASy Swiss-Prot
Match: LOX12_BOVIN (Arachidonate 12-lipoxygenase, 12S-type OS=Bos taurus GN=ALOX12 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 52/186 (27.96%), Postives = 83/186 (44.62%), Query Frame = 2
Query:   26 WDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNA 583
            W+ + ++V   V+ +Y     V  D ELQAW  +I  +G    +   +   L++   L   +T  ++  +G H++ + GQ  +  + PN P T R       P        LEK    ++ T P+  QA+  M+I   L    P    LG+  E  +   P   A  +KFR +L  LE  I+ RNA
Sbjct:  469 WEILSRYVEGIVSLHYKTDESVRDDIELQAWCRDITEIGLLGAQDRGFPVTLQSKDQLCHFVTMCIFTCTGQHSSTHLGQLDWYSWVPNAPCTMRL------PPPTTKDVTLEK----VMATLPNFHQASLQMSITWQLGRRQPIMVALGQH-EEEYFSGPEPKAVLKKFREELAALEKDIEIRNA 643          
BLAST of CX290641 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 52/185 (28.11%), Postives = 76/185 (41.08%), Query Frame = 2
Query:   26 WDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARN 580
            W+   ++V   V+ +Y    +V  D ELQAW  EI  VG    +   +    ++   L   +T  V+  +  HAA+N GQ  + G+ PN P T R    T            +     ++ + P   +A   M I   L    PD   LG   E  +  DP   A   +F+  L  LE  I ARN
Sbjct:  468 WEVTARYVKGMVHLFYQSDDIVRGDPELQAWCREITEVGLCHAQDRGFPVSFQSRAQLCHFLTMCVFTCTAQHAAINQGQLDWYGWVPNAPCTMRMPPPTSKD---------DVTMETVMGSLPDVQKACLQMTITWHLGRLQPDMVPLGHHTE-KYFSDPRTKAVLSQFQADLDNLEKEITARN 642          
The following BLAST results are available for this feature:
BLAST of CX290641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
LOXE3_MOUSE2.175e-1227.03Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LX12B_MOUSE2.841e-1228.65Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]
LOX12_HUMAN8.266e-1229.19Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
LX15B_RAT3.141e-1127.57Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LOX12_BOVIN4.102e-1127.96Arachidonate 12-lipoxygenase, 12S-type OS=Bos taur... [more]
LOX12_MOUSE5.358e-1128.11Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC01010E02SK Veg1 Citrus clementina cDNA clone C01010E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290641 ID=CX290641; Name=CX290641; organism=Citrus clementina; type=EST; length=635bp
TNNNNNNNNNNNNNNNNNNNNNNNNTGGGATGCCATAAAACAATGGGTTA
CCGATTATGTTAATCACTACTACCCTGATAAAAGCCTTGTAGAATCTGAT
GAAGAGCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGACACGGTGA
CAAGAAACATGAACCTTGGTGGCCTGTCTTGAAAACCCCTAAGGATTTAA
TTGAAATCATCACAACTATTGTTTGGGTAACATCTGGTCACCACGCAGCT
GTTAACTTCGGCCAATACATTTACGGAGGCTATTTCCCCAATAGGCCAAC
CACTGCAAGATGCAACATTGCCACTGAAGATCCATCTGATGAACAATGGA
AATTCTTCCTTGAAAAACCTGAAAATGCACTTTTGAATACCTTCCCTTCC
CAGATTCAAGCTACTAAAGTTATGGCTATTCTTGATGTTTTATCGACTCA
TTCTCCTGATGAGGAGTATTTAGGAAAAGAAATAGAGCCAGCATGGCGTG
AGGATCCGGTTATAAATGCAGCATTTGAAAAGTTTAGAGGCAAGTTAATG
GAGCTTGAAGGGATTATTGATGCAAGGAATGCAGATCCCAAGTTGAGGAA
TAGAAATGGAGCTGGGATGGTGCCATATGAGCTCT
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