CX290658

Overview
NameCX290658
Unique NameCX290658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXPB5_ARATH (Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 51/164 (31.10%), Postives = 75/164 (45.73%), Query Frame = 3
Query:  123 SAILIQLCCLSVSIK---AFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYST-GYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDM---AYPAWQKIG----IYRGGIVPVLYQRVPCKKP 581
            S I++     ++S+K     + + W  A  T+YG  +  GT GGACGYG+  +   Y    +A   +LF DG  CG CYR+ CD+   T+  IK     +  ++ CP            C     HFD+   A+ A  K G    +   G + V Y+R  CK P
Sbjct:   10 SFIVVLTTFFAISLKPCYCHNKTHWNTAGITWYGDREGPGTTGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLKCDHPLCTKKPIK-----VMISDECP-----------GCTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCKHP 157          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 47/151 (31.13%), Postives = 72/151 (47.68%), Query Frame = 3
Query:  180 SGWTQAHATFYGGSDASGTMGGACGYG-NLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAW-------QKIGIYRGGIVPVLYQRVPCKKPG-GVRFTIN 605
            SGW+   AT+YG  + +G+ GGACGY   +    +    AA S  +++ G  CG CYR++C   +    C  G  VT+  T+  P    L     G C     HFDM+  A+       Q   +   G++ + Y RV C+  G G+ F ++
Sbjct:   37 SGWSNGIATWYGDPNGAGSEGGACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVC---AGNEAC-SGIPVTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTFVVD 183          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 56/183 (30.60%), Postives = 82/183 (44.81%), Query Frame = 3
Query:  153 SVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGN-LYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAW-------QKIGIYRGGIVPVLYQRVPCKKPG-GVRFTI----NGRDYFELVLISNVAGAGSI 662
            ++S    S S W+ A +T+YG     G+ GGACGYGN +    +    +A   +LF  G  CG CY++ C  KS    C K   VT+  T+ CP            C     HFD++  A+       Q   +   G + +LY++V C   G  V F +    N   +   VL++ V G G I
Sbjct:   36 NISAATTSDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA---CSK-NPVTVVITDECP-----------GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSF--AVLVAYVNGDGEI 201          
The following BLAST results are available for this feature:
BLAST of CX290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
EXPB5_ARATH9.146e-1231.10Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 ... [more]
EXB12_ORYSJ1.195e-1131.13Expansin-B12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB2_ARATH2.661e-1130.60Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC02006G07SK IF1 Citrus clementina cDNA clone C02006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290658 ID=CX290658; Name=CX290658; organism=Citrus clementina; type=EST; length=671bp
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAATACGCCCCTCTTTCCG
AGAATCAATAGTTTTCACCAAACGTTTTATTGGCCATTGTTTGAGAAAGA
AATGGCGAAAACCTTGCTTACATCTGCAATCTTGATTCAACTCTGCTGTT
TAAGTGTCAGTATCAAAGCTTTTTCGCCTTCAGGCTGGACCCAAGCTCAT
GCCACATTCTACGGAGGCAGCGATGCCTCAGGGACAATGGGGGGAGCCTG
CGGGTATGGCAACTTGTATTCAACTGGGTATGGAATAAGCACAGCAGCAT
TGAGCACCGCATTGTTCAACGATGGAGCTTCATGTGGGCAATGCTACCGG
ATCATGTGTGACTATAAATCTGATACTAGATGGTGCATAAAAGGTACATC
TGTAACCATTACCGCTACAAACTTTTGCCCTCCTAACTTCGCTCTTCCAA
GCGACAATGGTGGCTGGTGCAATCCTCCTCGCCAGCATTTTGACATGGCT
TATCCCGCTTGGCAAAAGATTGGCATTTACAGAGGCGGGATCGTGCCCGT
TCTGTACCAAAGGGTACCGTGCAAGAAGCCTGGTGGAGTGAGATTCACTA
TTAATGGGAGGGATTATTTTGAGCTCGTATTGATTTCAAACGTGGCTGGG
GCTGGATCGATTAAATCTGCA
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