CX290672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PP150_ARATH (Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.047e-12 Identity = 25/93 (26.88%), Postives = 53/93 (56.99%), Query Frame = 1 Query: 160 KSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCL----------REARDVFNDMKQRGITPDVVTYTVLFDAHSK 408 + +Y LI C+ ++ A+ +++ G+ P+++TY ++++G C+ L R A VF++M+QRGI PDV +++++ +S+ Sbjct: 207 EKVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHMYSR 299 HSP 2 Score: 35.4242 bits (80), Expect = 1.047e-12 Identity = 15/48 (31.25%), Postives = 26/48 (54.17%), Query Frame = 3 Query: 492 MKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 MK GI P + +YT ++ LC+ LE+ + + + G+ P + TY Sbjct: 313 MKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISPSSATY 360
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PP164_ARATH (Pentatricopeptide repeat-containing protein At2g19280 OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2) HSP 1 Score: 54.299 bits (129), Expect = 1.348e-12 Identity = 32/114 (28.07%), Postives = 50/114 (43.86%), Query Frame = 1 Query: 67 NKLLTNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 408 + L+N+ D A +F+ + L P Y +I C ++A F L+ G P L T T++I + + +A VF +MK G+ DVVTY L + K Sbjct: 377 SSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGK 490 HSP 2 Score: 38.891 bits (89), Expect = 1.348e-12 Identity = 16/54 (29.63%), Postives = 30/54 (55.56%), Query Frame = 3 Query: 474 FSFLNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 F ++EM+ GI PDV +Y +LI + +++ + +E+ RG P T+ + Sbjct: 498 FELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAF 551 HSP 3 Score: 45.8246 bits (107), Expect = 8.386e-12 Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 3 Query: 492 MKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 M ++ ++PDV++ + L+ C Q +E I +FN++ D GL+PD V Y Sbjct: 574 MADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLY 621 HSP 4 Score: 44.669 bits (104), Expect = 8.386e-12 Identity = 26/129 (20.16%), Postives = 60/129 (46.51%), Query Frame = 1 Query: 40 GVLVKKSSCNKLLTNLLILR------DNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 408 G L+K + L T+ +++ ++A +F+ M T + Y+ L+ + ++ + + D + G++P + TY ++IH + EA ++ +++ +RG P + +T + SK Sbjct: 432 GALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSK 560 HSP 5 Score: 53.9138 bits (128), Expect = 6.758e-11 Identity = 29/107 (27.10%), Postives = 51/107 (47.66%), Query Frame = 1 Query: 127 KTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDAL 447 K + + P+ +Y + +C +M +A +F + + GL P + YT MI GYC + +A F + + G P + T T+L A S+ GS S +++ Sbjct: 362 KLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRF---GSISDAESV 465 HSP 6 Score: 33.4982 bits (75), Expect = 6.758e-11 Identity = 16/53 (30.19%), Postives = 25/53 (47.17%), Query Frame = 3 Query: 477 SFLNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 S MK G++ DV++Y L+ T L + +E+ G+ PD TY Sbjct: 464 SVFRNMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATY 516
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PP380_ARATH (Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 1.351e-12 Identity = 29/106 (27.36%), Postives = 53/106 (50.00%), Query Frame = 1 Query: 100 DNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINL 417 D ++A++ M++ P+ KL LC+ ++ + +++L KG L +Y++MI CK +RE+ +MK+ G+ PDV Y L +A K + Sbjct: 342 DPDSAVEFLVYMVSTGKLPAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTALQEMKKEGLAPDVSLYNALIEACCKAEM 447 HSP 2 Score: 38.1206 bits (87), Expect = 1.351e-12 Identity = 17/50 (34.00%), Postives = 30/50 (60.00%), Query Frame = 3 Query: 486 NEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 +EM G + ++ +Y VLI KL E+ + +F+++ +RG+EPD Y Sbjct: 456 DEMFVEGCKMNLTTYNVLIRKLSEEGEAEESLRLFDKMLERGIEPDETIY 505
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PPR5_ARATH (Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2) HSP 1 Score: 50.447 bits (119), Expect = 1.361e-12 Identity = 22/60 (36.67%), Postives = 37/60 (61.67%), Query Frame = 1 Query: 211 EQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVL 390 E+A+ F+ + KGL P ++TY +I YCK + +A + + M++ TPDV+TYT + Sbjct: 228 EEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTV 287 HSP 2 Score: 42.743 bits (99), Expect = 1.361e-12 Identity = 20/51 (39.22%), Postives = 27/51 (52.94%), Query Frame = 3 Query: 483 LNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 L EMKE G PDV +Y I C + L D + +E+ +GL P+ TY Sbjct: 304 LKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTY 354
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2) HSP 1 Score: 61.2326 bits (147), Expect = 1.770e-12 Identity = 34/117 (29.06%), Postives = 58/117 (49.57%), Query Frame = 1 Query: 40 GVLVKKSSCNKLLTNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVL 390 GV+ S N L+ + D + A +LF M+ + P Y LI C+ ++ A + D +++KG P ++YT +++ C+ LREA + MK +G PD+V Y + Sbjct: 185 GVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTM 301 HSP 2 Score: 31.5722 bits (70), Expect = 1.770e-12 Identity = 14/46 (30.43%), Postives = 23/46 (50.00%), Query Frame = 3 Query: 483 LNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEP 620 L++M G P+ +SY LI LC+ ++G E+ +G P Sbjct: 318 LDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSP 363 HSP 3 Score: 56.225 bits (134), Expect = 3.874e-12 Identity = 25/96 (26.04%), Postives = 54/96 (56.25%), Query Frame = 1 Query: 112 ALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDA 399 A +LFK+ P+ Y+ L+ A C +++ A +F ++++ + P + +Y ++I G+C+ + A ++ +DM +G PD ++YT L ++ Sbjct: 174 AFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNS 269 HSP 4 Score: 35.4242 bits (80), Expect = 3.874e-12 Identity = 15/54 (27.78%), Postives = 25/54 (46.30%), Query Frame = 3 Query: 474 FSFLNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 + L MK G PD++ Y +I C D V +++ G P++V+Y Sbjct: 280 YKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSY 333
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PP199_ARATH (Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 2.263e-12 Identity = 38/133 (28.57%), Postives = 65/133 (48.87%), Query Frame = 1 Query: 67 NKLLTNLLILRDNNNALKLFKTMITLNAE--PSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKE 459 N ++ L L ++ AL LF +M AE P + ++ E+E + VF+ +V +GL P++++Y ++ Y A V D+KQ GI PDVV+YT L +++ + G + + KE Sbjct: 287 NIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKE 419 HSP 2 Score: 30.4166 bits (67), Expect = 2.263e-12 Identity = 14/49 (28.57%), Postives = 27/49 (55.10%), Query Frame = 3 Query: 489 EMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 +M++ GI+P+V+S L+A ++ + TV + RG+ +T Y Sbjct: 450 QMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAY 498
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PP131_ARATH (Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 2.285e-12 Identity = 27/113 (23.89%), Postives = 54/113 (47.79%), Query Frame = 1 Query: 70 KLLTNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 408 +LL +L A+++ + M++ P S Y L+ LC+ + A + + + D G + +TY ++ G C + L ++ + Q+G+ P+ TY+ L +A K Sbjct: 111 QLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAAYK 223 HSP 2 Score: 36.965 bits (84), Expect = 2.285e-12 Identity = 15/51 (29.41%), Postives = 29/51 (56.86%), Query Frame = 3 Query: 483 LNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 L+E+ G P+++SY VL+ C +D + +F E+ +G + + V+Y Sbjct: 234 LDEIIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSY 284
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 2.938e-12 Identity = 33/95 (34.74%), Postives = 48/95 (50.53%), Query Frame = 1 Query: 106 NNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVL 390 + L+LF+ + P Y LI ALC+A +A ++F+ +V KGL P + TY MI G+CK + M + PDV+TYT L Sbjct: 596 DRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSL 690 HSP 2 Score: 34.6538 bits (78), Expect = 2.938e-12 Identity = 16/50 (32.00%), Postives = 26/50 (52.00%), Query Frame = 3 Query: 486 NEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 NEMK P+ I++ LI LC + + F E+ ++ +EPD+ Y Sbjct: 708 NEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVY 757
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PPR77_ARATH (Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 2.939e-12 Identity = 35/125 (28.00%), Postives = 61/125 (48.80%), Query Frame = 1 Query: 34 NQGVLVKKSSCNKLLTNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSK 408 ++GV + N L++ L A LF M+ N P +Y LI ++ + ++A+ VF + V+KG+ ++ + MI G+C+ L EA N M + + PD TY+ + D + K Sbjct: 443 DRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVK 567 HSP 2 Score: 31.5722 bits (70), Expect = 2.939e-12 Identity = 16/48 (33.33%), Postives = 26/48 (54.17%), Query Frame = 3 Query: 492 MKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 M++ +P+V++YT LI C + + F E+ R L P+ VTY Sbjct: 581 MEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTY 628 HSP 3 Score: 56.225 bits (134), Expect = 3.816e-12 Identity = 36/116 (31.03%), Postives = 54/116 (46.55%), Query Frame = 1 Query: 133 MITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSSSSPDALQCKEDVVDASV 480 +I + +P + Y+ LI LC+ + E A D KGL P+ ++Y +I YCK A + M +RG PD+VTY +L L S DA+ K ++D V Sbjct: 336 IIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIH-----GLVVSGHMDDAVNMKVKLIDRGV 446 HSP 4 Score: 35.4242 bits (80), Expect = 3.816e-12 Identity = 15/46 (32.61%), Postives = 24/46 (52.17%), Query Frame = 3 Query: 498 EMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 + G+ PD Y +L++ LC T +F+E+ DR + PD Y Sbjct: 443 DRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVY 488 HSP 5 Score: 51.6026 bits (122), Expect = 6.431e-12 Identity = 35/117 (29.91%), Postives = 56/117 (47.86%), Query Frame = 1 Query: 154 PSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAH----SKINLKGSSSSPDALQCKEDVVDASVF*TR 492 P+ Y+ +IG C+ ++E A LVF L KG P L T+ MI+G+CK + + +++K+RG+ V + DA K++ S A CK DV ++ R Sbjct: 238 PNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINR 354 HSP 6 Score: 39.2762 bits (90), Expect = 6.431e-12 Identity = 17/52 (32.69%), Postives = 31/52 (59.62%), Query Frame = 3 Query: 480 FLNEMKEMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 FL+E + G+ P+ +SY LI C ++ + + ++++RG +PD VTY Sbjct: 367 FLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTY 418 HSP 7 Score: 53.9138 bits (128), Expect = 3.077e-11 Identity = 34/122 (27.87%), Postives = 55/122 (45.08%), Query Frame = 1 Query: 31 SNQGVLVKKSSCNKLLTNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFD 396 S +G++ S L+ ++ + A KL M +P Y LI L + M+ A + L+D+G++P Y M++ G CK A+ +F++M R I PD Y L D Sbjct: 372 SKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLID 493 HSP 8 Score: 34.6538 bits (78), Expect = 3.077e-11 Identity = 13/46 (28.26%), Postives = 25/46 (54.35%), Query Frame = 3 Query: 498 EMGIRPDVISYTVLIAKLCNTQNLEDGITVFNEISDRGLEPDTVTY 635 E G++ DV+ + +I C + L++ + N +++ L PD TY Sbjct: 513 EKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTY 558
BLAST of CX290672 vs. ExPASy Swiss-Prot
Match: PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12 Identity = 39/130 (30.00%), Postives = 66/130 (50.77%), Query Frame = 1 Query: 40 GVLVKKSSCNKLLTNLLILRDNNNALKLFKTMITLNAEPSKSMYDKLIGALCQAEEMEQAQLVFDVLVDKGLTPHLITYTMMIHGYCKINCLREARDVFNDMKQRGITPDVVTYTVLFDAHSKINLKGSS 429 G+ +CN L+ L D +A K+ + ++ P+ Y ++G +ME A+ V + ++D+G P TYT+++ GYCK+ EA V +DM++ I P+ VTY V+ A K G + Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEA 315 The following BLAST results are available for this feature:
BLAST of CX290672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290672 ID=CX290672; Name=CX290672; organism=Citrus clementina; type=EST; length=635bpback to top |