CX290696

Overview
NameCX290696
Unique NameCX290696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.834e-78
Identity = 136/229 (59.39%), Postives = 183/229 (79.91%), Query Frame = 1
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T R++  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.701e-78
Identity = 136/229 (59.39%), Postives = 183/229 (79.91%), Query Frame = 1
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  +   RE+  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NT+D++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYV 334          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.406e-77
Identity = 135/229 (58.95%), Postives = 183/229 (79.91%), Query Frame = 1
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  + IDF GH+LAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.406e-77
Identity = 135/229 (58.95%), Postives = 183/229 (79.91%), Query Frame = 1
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  + IDF GH+LAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.399e-77
Identity = 135/229 (58.95%), Postives = 181/229 (79.04%), Query Frame = 1
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  +    E+  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.474e-71
Identity = 126/229 (55.02%), Postives = 173/229 (75.55%), Query Frame = 1
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            S+VY  G++ KVP  +MEALKSPLM +FEKRRA+KF  +V +Y E+DP T++ +++ R +   +  K+GL   T DFIGHA+AL+ DD YL +PA +T +R+ LYA SIA+F G SPYIYPLYGLGELPQ FARLSA+YGGTYMLN+P  ++ + ++G  +GV S  + AK K+++ DPSY   KVR VGR+ RAI I++HPIPNT++  SVQ+I+PQ Q+ R+ D+Y+
Sbjct:  107 SYVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSGTQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKF-GKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYI 334          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.045e-64
Identity = 119/231 (51.52%), Postives = 173/231 (74.89%), Query Frame = 1
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            S+V+ +GK++KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y   K +  G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+
Sbjct:  116 SYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYV 345          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: RAE2_MOUSE (Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.132e-18
Identity = 59/216 (27.31%), Postives = 108/216 (50.00%), Query Frame = 1
Query:   43 KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLSNKV---RKVGRVARAIAIMSHPIPNTNDSHSVQVIL 675
            +GKV +VP +  +   S  + + EKR   KF  +  DY+++   + E  D  + +  + +    L  N   FI H++A+  +        LD ++  K + + + RF G +P+I+PLYG GE+PQ F R+ AV+GG Y L +K +C V   + G+  G+    G+       + + SYL  +     +  +++RA+ I    I  T+    + +++
Sbjct:  269 EGKVEQVPCSRADVFNSKELSMVEKRMLMKFLTFCLDYEQH---SDEYQDFKQCSFSDYLKTKKLTPNLQHFILHSIAMTSESSCTT---LDGLQATKNFLQCLGRF-GNTPFIFPLYGHGEIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSYLPKETCSNVQYKQISRAVLITDQSILKTDSDQQISILV 477          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: RAE2_HUMAN (Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 61/225 (27.11%), Postives = 111/225 (49.33%), Query Frame = 1
Query:   37 YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLSNKV---RKVGRVARAIAIMSHPIPNTN-DSHSVQVILPQKQLG 693
            + +GKV +VP +  +   S  + + EKR   KF  +  +Y+++     E     + +  E +    L  N   F+ H++A+  +        +D +   K + + + RF G +P+++PLYG GE+PQ F R+ AV+GG Y L +K +C V   E G+   +    G+    K  + + SYLS +     +  +++RA+ I    I  T+ D  +  +I+P  + G
Sbjct:  268 FREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEYEQHPD---EYQAFRQCSFSEYLKTKKLTPNLQHFVLHSIAMTSESSCTT---IDGLNATKNFLQCLGRF-GNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILIVPPAEPG 485          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: RAE1_RAT (Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 64/227 (28.19%), Postives = 114/227 (50.22%), Query Frame = 1
Query:   37 YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN--DPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLS-NKVRKV--GRVARAIAIMSHPIPNTNDSHSVQVI-LPQKQLG 693
            + +G V +VP +  +   S  + + EKR   KF  +  +Y+E+  + + +EG      T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L +  +C V   E  K   V  + G+    K  + + SYLS N   +V   +++RA+ I    +  T+    V ++ +P ++ G
Sbjct:  263 FREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTSET---TSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVLKTDADQQVSILAVPAEEPG 480          
The following BLAST results are available for this feature:
BLAST of CX290696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
GDIB_HUMAN2.834e-7859.39Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_PIG3.701e-7859.39Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]
GDIB_RAT1.406e-7758.95Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE1.406e-7758.95Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_CANFA2.399e-7758.95Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDI1_SCHPO7.474e-7155.02Probable secretory pathway GDP dissociation inhibi... [more]
GDI1_YEAST1.045e-6451.52Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]
RAE2_MOUSE1.132e-1827.31Rab proteins geranylgeranyltransferase component A... [more]
RAE2_HUMAN2.789e-1727.11Rab proteins geranylgeranyltransferase component A... [more]
RAE1_RAT6.214e-1728.19Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionC02022A10SK IF1 Citrus clementina cDNA clone C02022A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290696 ID=CX290696; Name=CX290696; organism=Citrus clementina; type=EST; length=714bp
CGNNNNNNNNNNNNNNNNNNNNNNNNNAGCTTCGTCTATAATAAAGGAAA
GGTCCATAAGGTGCCAGCAACTGATATGGAAGCGCTCAAATCTCCACTCA
TGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTCATTTATGTTCAA
GATTATGATGAAAATGATCCCAAAACACACGAGGGAATGGACTTGACCAG
GGTGACCACTAGAGAGTTGATTGCGAAGTATGGTCTTGATGACAACACTA
TTGACTTCATTGGTCATGCATTGGCACTTCATAGAGATGATCGTTACTTA
AACGAACCTGCTCTTGATACAGTGAAGAGAATGAAGTTATACGCAGAGTC
TATTGCACGATTTCAAGGAGGATCACCATACATTTACCCTCTGTATGGGC
TTGGAGAGCTGCCTCAGGCCTTTGCTCGGCTTAGTGCTGTTTATGGTGGG
ACGTATATGTTGAATAAACCTGAGTGCAAGGTAGAGTTTGATGAAGAAGG
TAAAGTAGTCGGTGTCACGTCAGAAGGGGAAACTGCAAAGTGCAAGAAAG
TTGTTTGTGATCCTTCCTATTTGTCCAACAAGGTGAGGAAGGTTGGCAGG
GTTGCTAGGGCAATCGCTATTATGAGCCACCCAATCCCAAACACCAATGA
TTCCCATTCAGTGCAGGTTATCCTTCCGCAAAAACAGTTGGGTCGTAGAT
CAGACATGTACCTC
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