CX290696

Overview
NameCX290696
Unique NameCX290696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 56/203 (27.59%), Postives = 95/203 (46.80%), Query Frame = 1
Query:   40 NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY--LSNKVRKVGRVARAIAIMSHPIPN 642
            + G++  VP +  +   +  + I EKR   KF     DY E D    + ++    T  E +    + +     +  A+A+        E     ++R + +  S+ R+ G +P+++P+YG GELPQ F RL AVYGG Y L +    +  D       ++S G+T + K VV  P Y  +S  +     ++R + I S P+ N
Sbjct:  142 HNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGE-DKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEEG----MQRTQRFLGSLGRY-GNTPFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAGKTLRAKNVVSAPGYTPVSKGIELKPHISRGLFISSSPLGN 338          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: RAE1_MOUSE (Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 60/225 (26.67%), Postives = 111/225 (49.33%), Query Frame = 1
Query:   37 YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLSNKV---RKVGRVARAIAIMSHPIPNTNDSHSVQVI-LPQKQLG 693
            + +G V +VP +  +   S  + + EKR   KF  +  +Y+++ P  ++  + T  T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L +  +C V   E  K   +  + G+    K  V + SYLS       +  +++RA+ I    +   +    V ++ +P ++ G
Sbjct:  278 FREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEDH-PDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSIAMTSET---TSSTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSYLSENTCSGVQYRQISRAVLITDGSVLKPDSDQQVSILTVPAEESG 495          
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: RAE1_HUMAN (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 58/225 (25.78%), Postives = 110/225 (48.89%), Query Frame = 1
Query:   37 YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYL-SNKVRKV--GRVARAIAIMSHPIPNTNDSHSVQVI-LPQKQLG 693
            + +G+V +VP +  +   S  + + EKR   KF  +  +Y E  P  ++G +   +T  E +    L  N    + H++A+  +        +D +K  K +   + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L +  +C V   E  K   +  + G+    +  + + SY   N   +V   +++RA+ I    +  T+    + ++ +P ++ G
Sbjct:  266 FREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAMTSETA---SSTIDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFPENMCSRVQYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPG 483          
The following BLAST results are available for this feature:
BLAST of CX290696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RABEP_DROME6.214e-1727.59Rab proteins geranylgeranyltransferase component A... [more]
RAE1_MOUSE1.384e-1626.67Rab proteins geranylgeranyltransferase component A... [more]
RAE1_HUMAN1.531e-1525.78Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionC02022A10SK IF1 Citrus clementina cDNA clone C02022A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290696 ID=CX290696; Name=CX290696; organism=Citrus clementina; type=EST; length=714bp
CGNNNNNNNNNNNNNNNNNNNNNNNNNAGCTTCGTCTATAATAAAGGAAA
GGTCCATAAGGTGCCAGCAACTGATATGGAAGCGCTCAAATCTCCACTCA
TGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTCATTTATGTTCAA
GATTATGATGAAAATGATCCCAAAACACACGAGGGAATGGACTTGACCAG
GGTGACCACTAGAGAGTTGATTGCGAAGTATGGTCTTGATGACAACACTA
TTGACTTCATTGGTCATGCATTGGCACTTCATAGAGATGATCGTTACTTA
AACGAACCTGCTCTTGATACAGTGAAGAGAATGAAGTTATACGCAGAGTC
TATTGCACGATTTCAAGGAGGATCACCATACATTTACCCTCTGTATGGGC
TTGGAGAGCTGCCTCAGGCCTTTGCTCGGCTTAGTGCTGTTTATGGTGGG
ACGTATATGTTGAATAAACCTGAGTGCAAGGTAGAGTTTGATGAAGAAGG
TAAAGTAGTCGGTGTCACGTCAGAAGGGGAAACTGCAAAGTGCAAGAAAG
TTGTTTGTGATCCTTCCTATTTGTCCAACAAGGTGAGGAAGGTTGGCAGG
GTTGCTAGGGCAATCGCTATTATGAGCCACCCAATCCCAAACACCAATGA
TTCCCATTCAGTGCAGGTTATCCTTCCGCAAAAACAGTTGGGTCGTAGAT
CAGACATGTACCTC
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